RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 OSTNP61366 133 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 PSMC1P62191 440 aaKnown RBP15.66■□□□□ 0.1
NUP54-217ENST00000514987 OGDHQ02218 1023 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 LONRF1Q17RB8 773 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 WDR72Q3MJ13 1102 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 KAZNQ674X7 775 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 ARMCX2Q7L311 632 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 APBB1IPQ7Z5R6 666 aaPredicted RBP15.66■□□□□ 0.1
NUP54-217ENST00000514987 ZNF467Q7Z7K2 595 aaPredicted RBP15.66■□□□□ 0.1
NUP54-217ENST00000514987 EXOC3L1Q86VI1 746 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 LINC01465Q8N7H1 131 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 C1orf127Q8N9H9 656 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 PPTC7Q8NI37 304 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 COPS5Q92905 334 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 PHACTR1Q9C0D0 580 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 RNPEPQ9H4A4 650 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 SYNCQ9H7C4 482 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 IFT122Q9HBG6 1241 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 PCDH9Q9HC56 1237 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 SIX4Q9UIU6 781 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 ITGA11Q9UKX5 1188 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 DNPEPQ9ULA0 475 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 POLIQ9UNA4 740 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 SHOC2Q9UQ13 582 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 SLC45A1Q9Y2W3 748 aa15.66■□□□□ 0.1
NUP54-217ENST00000514987 GPR25O00155 361 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 SMAPO00193 183 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 CILPO75339 1184 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 LGALS2P05162 132 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 KRT10P13645 584 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 MAGEA4P43358 317 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 GABRB2P47870 512 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 LIG3P49916 1009 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 ARSEP51690 589 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 PTPN11Q06124 597 aaPredicted RBP15.65■□□□□ 0.1
NUP54-217ENST00000514987 ITIH4Q14624 930 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 OASLQ15646 514 aaKnown RBP15.65■□□□□ 0.1
NUP54-217ENST00000514987 TAZQ16635 292 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 QPCTQ16769 361 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 PTPN20Q4JDL3 420 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 ATP13A4Q4VNC1 1196 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 SCARA3Q6AZY7 606 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 DPY19L2Q6NUT2 758 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 ANKS1BQ7Z6G8 1248 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 CCDC197Q8NCU1 140 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 GPRC5AQ8NFJ5 357 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 TMEM176AQ96HP8 235 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 L3MBTL3Q96JM7 780 aaPredicted RBP15.65■□□□□ 0.1
NUP54-217ENST00000514987 RBM15Q96T37 977 aaKnown RBP eCLIP15.65■□□□□ 0.13e-11■■■■■ 43.2
NUP54-217ENST00000514987 R3HDMLQ9H3Y0 253 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 MINDY3Q9H8M7 445 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 C2CD2Q9Y426 696 aa15.65■□□□□ 0.1
NUP54-217ENST00000514987 STRNO43815 780 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 NFICP08651 508 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 RFC1P35251 1148 aaPredicted RBP15.64■□□□□ 0.09
NUP54-217ENST00000514987 RBP5P82980 135 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 STILQ15468 1287 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 AMHR2Q16671 573 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 ZNF792Q3KQV3 632 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 UBAP2Q5T6F2 1119 aaKnown RBP15.64■□□□□ 0.09
NUP54-217ENST00000514987 LDLRAD1Q5T700 205 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 CYP4A22Q5TCH4 519 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 JADE1Q6IE81 842 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 BBS12Q6ZW61 710 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 PIGWQ7Z7B1 504 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 CEP120Q8N960 986 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 SLC35B2Q8TB61 432 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 KDM4CQ9H3R0 1056 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 PDZD7Q9H5P4 517 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 PDGFCQ9NRA1 345 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 KLHL11Q9NVR0 708 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 SAMD15Q9P1V8 674 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 MCM3APO60318 1980 aa15.64■□□□□ 0.09
NUP54-217ENST00000514987 A0A087WZ62 844 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 GOLGA8SH3BPF8 625 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 RNF8O76064 485 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 ITGB3P05106 788 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 GJB1P08034 283 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 GHRP10912 638 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 SLC25A11Q02978 314 aaKnown RBP15.63■□□□□ 0.09
NUP54-217ENST00000514987 ACTN3Q08043 901 aaPredicted RBP15.63■□□□□ 0.09
NUP54-217ENST00000514987 GPS1Q13098 491 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 TMEM132DQ14C87 1099 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 LACTB2Q53H82 288 aaPredicted RBP15.63■□□□□ 0.09
NUP54-217ENST00000514987 TAPT1Q6NXT6 567 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 XYLT1Q86Y38 959 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 TDRPQ86YL5 185 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 SLC4A11Q8NBS3 891 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 DYDC1Q8WWB3 177 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 MCRS1Q96EZ8 462 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 FDXACB1Q9BRP7 624 aaPredicted RBP15.63■□□□□ 0.09
NUP54-217ENST00000514987 ADPGKQ9BRR6 497 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 UBN1Q9NPG3 1134 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 ASNSD1Q9NWL6 643 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.63■□□□□ 0.09
NUP54-217ENST00000514987 AKT3Q9Y243 479 aa15.63■□□□□ 0.09
NUP54-217ENST00000514987 GOLGB1Q14789 3259 aaKnown RBP15.63■□□□□ 0.09
NUP54-217ENST00000514987 C3orf70A6NLC5 250 aaPredicted RBP15.62■□□□□ 0.09
NUP54-217ENST00000514987 LRCH4O75427 683 aa15.62■□□□□ 0.09
NUP54-217ENST00000514987 IQCF3P0C7M6 154 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms