RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ORC2Q13416 577 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 PUS10Q3MIT2 529 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 LRRC31Q6UY01 552 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 GJD3Q8N144 294 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 ANKRD36BP1Q96IX9 119 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 MFSD1Q9H3U5 465 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 AGPAT3Q9NRZ7 376 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 ASXL3Q9C0F0 2248 aa8.4□□□□□ -1.06
LIMCH1-219ENST00000514096 SPEGQ15772 3267 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 CACNA1IQ9P0X4 2223 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 A0A087WUV0 522 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 CLDN5O00501 218 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 TRAPPC3O43617 180 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 HUS1O60921 280 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 PNMA6AP0CW24 399 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 VASPP50552 380 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 MYL6P60660 151 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 FAM160A1Q05DH4 1040 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 MTMR3Q13615 1198 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 LRSAM1Q6UWE0 723 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 UNC13DQ70J99 1090 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 PHLDB2Q86SQ0 1253 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 SIX5Q8N196 739 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 GPD1LQ8N335 351 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 VN1R2Q8NFZ6 395 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 ZFYVE19Q96K21 471 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 BRD8Q9H0E9 1235 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 ZDHHC4Q9NPG8 344 aa8.4□□□□□ -1.07
LIMCH1-219ENST00000514096 PTPRJQ12913 1337 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 GLP2RO95838 553 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 NR3C1P04150 777 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 AXLP30530 894 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 PIK3CAP42336 1068 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 PMS1P54277 932 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 PLD1Q13393 1074 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 ARHGAP44Q17R89 818 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 KNOP1Q1ED39 458 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 TBC1D25Q3MII6 688 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 XXYLT1Q8NBI6 393 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 POMKQ9H5K3 350 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 ABCF3Q9NUQ8 709 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 HOOK1Q9UJC3 728 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 CACNA1EQ15878 2313 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 SYNJ2BP-COX16A0A087WUM0 186 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 PFDN1O60925 122 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 GAP43P17677 238 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 KIF11P52732 1056 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 TNNC1P63316 161 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 GRM2Q14416 872 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 CNNM4Q6P4Q7 775 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 RRAGAQ7L523 313 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 SUGP1Q8IWZ8 645 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 HPDLQ96IR7 371 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 TRIM5Q9C035 493 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 NUP62CLQ9H1M0 184 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 EPHX3Q9H6B9 360 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 KBTBD4Q9NVX7 518 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 RHBDL2Q9NX52 303 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 COX16Q9P0S2 106 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 CD207Q9UJ71 328 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 ADAM21Q9UKJ8 722 aa8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 MRPS23Q9Y3D9 190 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-219ENST00000514096 A8MXQ7 604 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 ZNF623O75123 536 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SMIM24O75264 130 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 MCF2P10911 925 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 LMO2P25791 158 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CDC25CP30307 473 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 LTBRP36941 435 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 MAGEA8P43361 318 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 FAM189BP81408 668 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 C11orf91Q3C1V1 193 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CCDC92Q53HC0 331 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 STXBP5Q5T5C0 1151 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 MAP4K3Q8IVH8 894 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 FAM186BQ8IYM0 893 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 PDLIM2Q96JY6 352 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 ASB2Q96Q27 587 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 KXD1Q9BQD3 176 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CCDC113Q9H0I3 377 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 ATXN3LQ9H3M9 355 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CA14Q9ULX7 337 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 UBQLN1Q9UMX0 589 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 BZW2Q9Y6E2 419 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 MYH11P35749 1972 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 A0A0B4J269 797 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 A0A1W2PRU2 124 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 INPPL1O15357 1258 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SLC26A4O43511 780 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 SLU7O95391 586 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 PECAM1P16284 738 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CYP2F1P24903 491 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 GRIK1P39086 918 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 GRM5P41594 1212 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 MTIF2P46199 727 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 STIM1Q13586 685 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 TJAP1Q5JTD0 557 aa8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CDCA2Q69YH5 1023 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-219ENST00000514096 CCDC149Q6ZUS6 474 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms