RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PPP1R35Q8TAP8 253 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 FAM167AQ96KS9 214 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 CGRRF1Q99675 332 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 TMEM60Q9H2L4 133 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 JKAMPQ9P055 326 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 FZD1Q9UP38 647 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 ATP7BP35670 1465 aa4.72□□□□□ -1.65
NUP54-212ENST00000513248 COL22A1Q8NFW1 1626 aaPredicted RBP4.72□□□□□ -1.65
NUP54-212ENST00000513248 BCL9LQ86UU0 1499 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 RALGAPBQ86X10 1494 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 KIAA0232Q92628 1395 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 TCRBV7S2A1N4TA0A589 114 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 GAGE12BA1L429 117 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 CCDC78A2IDD5 438 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 GAGE12HA6NDE8 117 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 RNASET2O00584 256 aaKnown RBP4.71□□□□□ -1.66
NUP54-212ENST00000513248 UBXN7O94888 489 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 GCP02774 474 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 ITGB1P05556 798 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 SPATA31D3P0C874 917 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 SLC6A2P23975 617 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 CHN2P52757 468 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 SLFN5Q08AF3 891 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 HNRNPA0Q13151 305 aaKnown RBP4.71□□□□□ -1.66
NUP54-212ENST00000513248 TIGD2Q4W5G0 525 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 EMC10Q5UCC4 262 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 KCNV1Q6PIU1 500 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 SLC4A10Q6U841 1118 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 SPATA31D4Q6ZUB0 917 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 TOM1L2Q6ZVM7 507 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 RSPH3Q86UC2 560 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 DENND1CQ8IV53 801 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 GRAMD1CQ8IYS0 662 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 FAM43AQ8N2R8 423 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 KCNH5Q8NCM2 988 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 ZBTB34Q8NCN2 500 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 FUBP1Q96AE4 644 aaKnown RBP4.71□□□□□ -1.66
NUP54-212ENST00000513248 PHACTR3Q96KR7 559 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 OBP2AQ9NY56 170 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 TERF2IPQ9NYB0 399 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 VSX1Q9NZR4 365 aaPredicted RBP4.71□□□□□ -1.66
NUP54-212ENST00000513248 DDX20Q9UHI6 824 aaKnown RBP4.71□□□□□ -1.66
NUP54-212ENST00000513248 RUVBL1Q9Y265 456 aaKnown RBP4.71□□□□□ -1.66
NUP54-212ENST00000513248 STXBP5LQ9Y2K9 1186 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 ARHGEF28Q8N1W1 1705 aaKnown RBP4.71□□□□□ -1.66
NUP54-212ENST00000513248 KIAA1210Q9ULL0 1709 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 USP32Q8NFA0 1604 aa4.71□□□□□ -1.66
NUP54-212ENST00000513248 POLR3AO14802 1390 aaPredicted RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 KTN1Q86UP2 1357 aaKnown RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 ZNF185O15231 689 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 NCR1O76036 304 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 MATN4O95460 622 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 ABHD16AO95870 558 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 FTLP02792 175 aaPredicted RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 CD1AP06126 327 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 MTHFD1P11586 935 aaKnown RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 LAG3P18627 525 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 USP14P54578 494 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 TMF1P82094 1093 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 PLS1Q14651 629 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 PDCD4Q53EL6 469 aaKnown RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 LY6G5CQ5SRR4 150 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 ZNF365Q70YC5 407 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 UBE3BQ7Z3V4 1068 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 HEATR3Q7Z4Q2 680 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 Q8NA96 180 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 NLGN4YQ8NFZ3 816 aaPredicted RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 KLHDC4Q8TBB5 520 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 PROKR1Q8TCW9 393 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 MYEOVQ96EZ4 313 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 CDK5RAP3Q96JB5 506 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 LRGUKQ96M69 825 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 MLST8Q9BVC4 326 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 TEX101Q9BY14 249 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 MRPL46Q9H2W6 279 aaKnown RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 GSTO2Q9H4Y5 243 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 WDCPQ9H6R7 721 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 AKIP1Q9NQ31 210 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 KMT5AQ9NQR1 393 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 C1orf112Q9NSG2 853 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 KLHL11Q9NVR0 708 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 L1RE1Q9UN81 338 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 USP15Q9Y4E8 981 aaPredicted RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 PCDHA3Q9Y5H8 950 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 NR2E3Q9Y5X4 410 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 HS3ST4Q9Y661 456 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 SLIT2O94813 1529 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 RGPD8O14715 1765 aaPredicted RBP4.7□□□□□ -1.66
NUP54-212ENST00000513248 TTC21BQ7Z4L5 1316 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 TTC21AQ8NDW8 1320 aa4.7□□□□□ -1.66
NUP54-212ENST00000513248 ITSN1Q15811 1721 aa4.69□□□□□ -1.66
NUP54-212ENST00000513248 BRD4O60885 1362 aaPredicted RBP4.69□□□□□ -1.66
NUP54-212ENST00000513248 CTNND1O60716 968 aaKnown RBP4.69□□□□□ -1.66
NUP54-212ENST00000513248 ELANEP08246 267 aa4.69□□□□□ -1.66
NUP54-212ENST00000513248 ALAS1P13196 640 aa4.69□□□□□ -1.66
NUP54-212ENST00000513248 HTR1BP28222 390 aa4.69□□□□□ -1.66
NUP54-212ENST00000513248 ADRA1BP35368 520 aa4.69□□□□□ -1.66
NUP54-212ENST00000513248 GFOD2Q3B7J2 385 aa4.69□□□□□ -1.66
NUP54-212ENST00000513248 LRCH2Q5VUJ6 765 aa4.69□□□□□ -1.66
NUP54-212ENST00000513248 SWSAP1Q6NVH7 229 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms