RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 HSP90AA1P07900 732 aaKnown RBP16.53■□□□□ 0.24
TPM3-219ENST00000509409 CSH1P0DML2 217 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 CSH2P0DML3 217 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 WEE1P30291 646 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 AVPR1AP37288 418 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 CXCL12P48061 93 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 LHX1P48742 406 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 RPL10AP62906 217 aaKnown RBP16.53■□□□□ 0.24
TPM3-219ENST00000509409 ASIC1P78348 528 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 SURF1Q15526 300 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 DDR2Q16832 855 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 SCARA3Q6AZY7 606 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 RALGPS2Q86X27 583 aaPredicted RBP16.53■□□□□ 0.24
TPM3-219ENST00000509409 CMTM8Q8IZV2 173 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 IQUBQ8NA54 791 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 MRPS31Q92665 395 aaKnown RBP16.53■□□□□ 0.24
TPM3-219ENST00000509409 CUEDC2Q9H467 287 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 GKN1Q9NS71 199 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 RBM12Q9NTZ6 932 aaKnown RBP16.53■□□□□ 0.24
TPM3-219ENST00000509409 ZMYM5Q9UJ78 669 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 GTF3C4Q9UKN8 822 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 F5P12259 2224 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 MYBPHLA2RUH7 354 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 CUTAO60888 179 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 LILRB5O75023 590 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 F11P03951 625 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 CYP2F1P24903 491 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 DDX6P26196 483 aaKnown RBP eCLIP16.52■□□□□ 0.24
TPM3-219ENST00000509409 NLRP12P59046 1061 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 TNK2Q07912 1038 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 PON2Q15165 354 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 DUOXA2Q1HG44 320 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 INTS6LQ5JSJ4 861 aaKnown RBP16.52■□□□□ 0.24
TPM3-219ENST00000509409 DGKKQ5KSL6 1271 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 TXNDC8Q6A555 127 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 MAMSTRQ6ZN01 415 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 ERMP1Q7Z2K6 904 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 SPATA2LQ8IUW3 424 aaPredicted RBP16.52■□□□□ 0.24
TPM3-219ENST00000509409 SCN4BQ8IWT1 228 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 ADGRF2Q8IZF7 708 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 TOP6BLQ8N6T0 577 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 RDH13Q8NBN7 331 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 STKLD1Q8NE28 680 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 GLIS3Q8NEA6 775 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 NELL1Q92832 810 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 INTS13Q9NVM9 706 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 KBTBD4Q9NVX7 518 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 GDAP2Q9NXN4 497 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 HSPBP1Q9NZL4 362 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 SIX4Q9UIU6 781 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 RAB23Q9ULC3 237 aa16.52■□□□□ 0.24
TPM3-219ENST00000509409 SMG5Q9UPR3 1016 aaKnown RBP16.52■□□□□ 0.24
TPM3-219ENST00000509409 SCN1AP35498 2009 aa16.52■□□□□ 0.23
TPM3-219ENST00000509409 YEATS4O95619 227 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 HMGA1P17096 107 aaKnown RBP16.51■□□□□ 0.23
TPM3-219ENST00000509409 PCSK1P29120 753 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 CTHP32929 405 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 SATB1Q01826 763 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 ITPRIPL2Q3MIP1 535 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 TXNDC11Q6PKC3 985 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 OSTM1Q86WC4 334 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 CBWD2Q8IUF1 395 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 SPEM1Q8N4L4 309 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 TTC16Q8NEE8 873 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 OR5B17Q8NGF7 314 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 CXorf38Q8TB03 319 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 LEO1Q8WVC0 666 aaPredicted RBP16.51■□□□□ 0.23
TPM3-219ENST00000509409 RMDN1Q96DB5 314 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 HPDLQ96IR7 371 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 TRIM9Q9C026 710 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 EPC1Q9H2F5 836 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 KIAA1586Q9HCI6 787 aa16.51■□□□□ 0.23
TPM3-219ENST00000509409 UXTQ9UBK9 157 aaPredicted RBP16.51■□□□□ 0.23
TPM3-219ENST00000509409 GVINP1Q7Z2Y8 2422 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 WDR87Q6ZQQ6 2873 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.5■□□□□ 0.23
TPM3-219ENST00000509409 CLIC2O15247 247 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 GAS6Q14393 721 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 E2F4Q16254 413 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 SOWAHAQ2M3V2 549 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 CC2D1AQ6P1N0 951 aaPredicted RBP16.5■□□□□ 0.23
TPM3-219ENST00000509409 PRR23BQ6ZRT6 265 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 DPH6Q7L8W6 267 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 TMEM150AQ86TG1 271 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 HSCBQ8IWL3 235 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 NELFCDQ8IXH7 590 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 GPR161Q8N6U8 529 aaKnown RBP16.5■□□□□ 0.23
TPM3-219ENST00000509409 SPATA18Q8TC71 538 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 ZNF507Q8TCN5 953 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 FNBP1Q96RU3 617 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 MMS19Q96T76 1030 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 C7orf25Q9BPX7 421 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 TRPC7Q9HCX4 862 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 ABCB6Q9NP58 842 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 TDP1Q9NUW8 608 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 FAM13BQ9NYF5 915 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 MAGEC2Q9UBF1 373 aaPredicted RBP16.5■□□□□ 0.23
TPM3-219ENST00000509409 GMEB2Q9UKD1 530 aa16.5■□□□□ 0.23
TPM3-219ENST00000509409 SPTBN4Q9H254 2564 aa16.49■□□□□ 0.23
TPM3-219ENST00000509409 EIF3DO15371 548 aaKnown RBP eCLIP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms