RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 SHROOM1Q2M3G4 852 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 TTC23Q5W5X9 447 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 EID3Q8N140 333 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 SYTL5Q8TDW5 730 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 AASDHPPTQ9NRN7 309 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 TBC1D22BQ9NU19 505 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 VTI1BQ9UEU0 232 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 PFDN2Q9UHV9 154 aa11.67□□□□□ -0.54
LIMCH1-208ENST00000508501 CCDC182A6NF36 153 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 AKT1P31749 480 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 STAT3P40763 770 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 PRIM2P49643 509 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 COASYQ13057 564 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 SLC29A2Q14542 456 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 LRRC24Q50LG9 513 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 EXOC3L1Q86VI1 746 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 RNF135Q8IUD6 432 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 C9orf72Q96LT7 481 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 THUMPD3Q9BV44 507 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 SPATA16Q9BXB7 569 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 UGT2B28Q9BY64 529 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 MARCOQ9UEW3 520 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 AXIN1O15169 862 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 PRPF4O43172 522 aaKnown RBP eCLIP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 YWHABP31946 246 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 FDFT1P37268 417 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 CHN2P52757 468 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 RPL19P84098 196 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 DSTYKQ6XUX3 929 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 RNPEPL1Q9HAU8 725 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 ABCC1P33527 1531 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 CLDN3O15551 220 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 NDUFS3O75489 264 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 ANXA6P08133 673 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 ADD2P35612 726 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 ZNF235Q14590 738 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 RASA2Q15283 850 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 NDUFAF6Q330K2 333 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 MFSD14BQ5SR56 506 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 THEMIS2Q5TEJ8 643 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 SEL1L3Q68CR1 1132 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 NAPEPLDQ6IQ20 393 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 GLYCTKQ8IVS8 523 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 CENPIQ92674 756 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 C6orf62Q9GZU0 229 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 PLEKHG2Q9H7P9 1386 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 ACAD9Q9H845 621 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 EPB41L4AQ9HCS5 686 aaPredicted RBP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 SARS2Q9NP81 518 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 AK5Q9Y6K8 562 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 MRC2Q9UBG0 1479 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 DDHD2O94830 711 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 UBOX5O94941 541 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 SFNP31947 248 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 RAB2AP61019 212 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 KCTD2Q14681 263 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 PDK1Q15118 436 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 KCTD21Q4G0X4 260 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 GOLPH3Q9H4A6 298 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 RAB6BQ9NRW1 208 aa11.66□□□□□ -0.54
LIMCH1-208ENST00000508501 TRIM49BA6NDI0 452 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 POTEMA6NI47 508 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 FAM220BPB1ANY3 271 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 TRIM49D1C9J1S8 452 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 BTN3A3O00478 584 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 FAM20BO75063 409 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 AP1G2O75843 785 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 FYNP06241 537 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 MYL4P12829 197 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 TCN1P20061 433 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 CDK17Q00537 523 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 POTEHQ6S545 545 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 POTEGQ6S5H5 508 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 CAMK1DQ8IU85 385 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 LRRC47Q8N1G4 583 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 GDPD5Q8WTR4 605 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 ANKS1AQ92625 1134 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 TEX33O43247 280 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 PEX1O43933 1283 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 MAPKAPK2P49137 400 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 HIRAP54198 1017 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 ITGADQ13349 1161 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 NR1I3Q14994 352 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 ANKMY2Q8IV38 441 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 FUKQ8N0W3 1084 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 BHMTQ93088 406 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 DHX35Q9H5Z1 703 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 GPAMQ9HCL2 828 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 HSPBP1Q9NZL4 362 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 PDE8BO95263 885 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 GP5P40197 560 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 MAPK6Q16659 721 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 HIST2H2ACQ16777 129 aaPredicted RBP11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 TBCELQ5QJ74 424 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 HIST2H2AA3Q6FI13 130 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 RAPGEFL1Q9UHV5 662 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 TOPBP1Q92547 1522 aa11.65□□□□□ -0.54
LIMCH1-208ENST00000508501 KCNN4O15554 427 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms