RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TOB1P50616 345 aaPredicted RBP4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 ANXA11P50995 505 aaKnown RBP4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 TNFAIP2Q03169 654 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 FPGSQ05932 587 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 SLC29A2Q14542 456 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 KRT72Q14CN4 511 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 PLA1AQ53H76 456 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 B3GNTL1Q67FW5 361 aaPredicted RBP4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 CATSPERGQ6ZRH7 1159 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 LRRC55Q6ZSA7 311 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 Q8NA96 180 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 POF1BQ8WVV4 589 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 ZNF566Q969W8 418 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 PPP1R9BQ96SB3 815 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 CDK5RAP1Q96SZ6 601 aaKnown RBP4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 MESP1Q9BRJ9 268 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 CRB3Q9BUF7 120 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 ZNF768Q9H5H4 540 aaKnown RBP4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 PTPRHQ9HD43 1115 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 AKIP1Q9NQ31 210 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 XPNPEP3Q9NQH7 507 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 PARPBPQ9NWS1 579 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 CDC23Q9UJX2 597 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 SHOC2Q9UQ13 582 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 TESMINQ9Y4I5 508 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 NOX1Q9Y5S8 564 aa4.89□□□□□ -1.63
HMGB1P28-201ENST00000507778 PRAMEF33A0A0G2JMD5 474 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 A0A1W2PS29 197 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 CLCA1A8K7I4 914 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 PLA2G6O60733 806 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 PRAMEF10O60809 474 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 TCEA3O75764 348 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 NCR1O76036 304 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 BTF3P20290 206 aaKnown RBP4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 ITGALP20701 1170 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 EEF1GP26641 437 aaKnown RBP4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 LRPAP1P30533 357 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 IL6STP40189 918 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 PXNP49023 591 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 CXADRP78310 365 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 FAM189BP81408 668 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 MC2RQ01718 297 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 DYRK1AQ13627 763 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 ARHGEF7Q14155 803 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 INSCQ1MX18 579 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 MPEG1Q2M385 716 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 SLC35G1Q2M3R5 365 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 MGAT5BQ3V5L5 792 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 RRAGBQ5VZM2 374 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 ARMC6Q6NXE6 501 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 CERS3Q8IU89 383 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 C1orf210Q8IVY1 113 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 SMCR8Q8TEV9 937 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 EXTL1Q92935 676 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 DVL3Q92997 716 aaPredicted RBP4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 RNF31Q96EP0 1072 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 TMEM41AQ96HV5 264 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 BOD1Q96IK1 185 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 EIF2AQ9BY44 585 aaKnown RBP4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 SMOC2Q9H3U7 446 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 MID2Q9UJV3 735 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 MAN2B2Q9Y2E5 1009 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 TBC1D30Q9Y2I9 924 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 MAP3K2Q9Y2U5 619 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 SPATA31A3Q5VYP0 1347 aa4.88□□□□□ -1.63
HMGB1P28-201ENST00000507778 MYADML2A6NDP7 307 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 F5H697 171 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 RAB27BO00194 218 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 HNRNPDLO14979 420 aaKnown RBP4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 ADAMTS3O15072 1205 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 PLSCR1O15162 318 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 CCP110O43303 1012 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 FOXD2O60548 495 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 NDUFA10O95299 355 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 MYL4P12829 197 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 ACVR2AP27037 513 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 TRAPPC10P48553 1259 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 ZNF134P52741 427 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 LOXL3P58215 753 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 LILRA4P59901 499 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 RPS7P62081 194 aaKnown RBP4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 KRT17Q04695 432 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 RESTQ13127 1097 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 GRM1Q13255 1194 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 HLXQ14774 488 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 STARD3Q14849 445 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 R3HDM1Q15032 1099 aaKnown RBP4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 ZRSR2Q15696 482 aaKnown RBP4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 CYP2A13Q16696 494 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 PREPLQ4J6C6 727 aaPredicted RBP4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 USP39Q53GS9 565 aaKnown RBP4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 TMEM108Q6UXF1 575 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 TSHZ1Q6ZSZ6 1077 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 MICALCLQ6ZW33 695 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 TMPRSS9Q7Z410 1059 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 ZNF280BQ86YH2 543 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 PALM2Q8IXS6 379 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 VGLL2Q8N8G2 317 aa4.87□□□□□ -1.63
HMGB1P28-201ENST00000507778 FANCBQ8NB91 859 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms