RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 NUCKS1Q9H1E3 243 aaKnown RBP23.16■■□□□ 1.3
C9orf3-222ENST00000496567 GTF3C4Q9UKN8 822 aa23.16■■□□□ 1.3
C9orf3-222ENST00000496567 PCDHGC5Q9Y5F6 944 aa23.16■■□□□ 1.3
C9orf3-222ENST00000496567 RNF225M0QZC1 329 aaPredicted RBP23.15■■□□□ 1.3
C9orf3-222ENST00000496567 KLRC2P26717 231 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 BPIFB4P59827 614 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 ZBED6P86452 979 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 ROR1Q01973 937 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 ORC1Q13415 861 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 RAB33AQ14088 237 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 NFE2Q16621 373 aaPredicted RBP23.15■■□□□ 1.3
C9orf3-222ENST00000496567 SLC39A12Q504Y0 691 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 FAM171BQ6P995 826 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 GLYCTKQ8IVS8 523 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 MYCBPAPQ8TBZ2 947 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 ANP32BQ92688 251 aaKnown RBP23.15■■□□□ 1.3
C9orf3-222ENST00000496567 CRTAC1Q9NQ79 661 aa23.15■■□□□ 1.3
C9orf3-222ENST00000496567 ADAM12O43184 909 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 ATP2C2O75185 946 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 OR4Q2P0C623 313 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 CCDC172P0C7W6 258 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 CASP14P31944 242 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 PTK2Q05397 1052 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 MDH1BQ5I0G3 518 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 TPGS2Q68CL5 300 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 LRRTM3Q86VH5 581 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 ZNF461Q8TAF7 563 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 PKMYT1Q99640 499 aa23.14■■□□□ 1.3
C9orf3-222ENST00000496567 MYO9BQ13459 2157 aa23.14■■□□□ 1.29
C9orf3-222ENST00000496567 MYBPHLA2RUH7 354 aa23.14■■□□□ 1.29
C9orf3-222ENST00000496567 CYP26A1O43174 497 aa23.14■■□□□ 1.29
C9orf3-222ENST00000496567 C1RP00736 705 aa23.14■■□□□ 1.29
C9orf3-222ENST00000496567 PNMA6AP0CW24 399 aaPredicted RBP23.14■■□□□ 1.29
C9orf3-222ENST00000496567 VDRP11473 427 aa23.14■■□□□ 1.29
C9orf3-222ENST00000496567 C4orf50Q6ZRC1 276 aa23.14■■□□□ 1.29
C9orf3-222ENST00000496567 C2orf15Q8WU43 125 aaKnown RBP23.14■■□□□ 1.29
C9orf3-222ENST00000496567 FAM161BQ96MY7 647 aa23.14■■□□□ 1.29
C9orf3-222ENST00000496567 GAS2L1Q99501 681 aaPredicted RBP23.14■■□□□ 1.29
C9orf3-222ENST00000496567 TRANK1O15050 2925 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 WDR27A2RRH5 827 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 LRRC53A6NM62 1247 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 GFPT2O94808 682 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 ABLIM3O94929 683 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 CD19P15391 556 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 POU3F3P20264 500 aaPredicted RBP23.13■■□□□ 1.29
C9orf3-222ENST00000496567 CLCN1P35523 988 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 FXR1P51114 621 aaKnown RBP eCLIP23.13■■□□□ 1.29
C9orf3-222ENST00000496567 TBX2Q13207 712 aaPredicted RBP23.13■■□□□ 1.29
C9orf3-222ENST00000496567 SGO2Q562F6 1265 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 CDCA3Q99618 268 aaPredicted RBP23.13■■□□□ 1.29
C9orf3-222ENST00000496567 NSUN3Q9H649 340 aaKnown RBP23.13■■□□□ 1.29
C9orf3-222ENST00000496567 TLE6Q9H808 572 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 AFF4Q9UHB7 1163 aaKnown RBP23.13■■□□□ 1.29
C9orf3-222ENST00000496567 MAFFQ9ULX9 164 aa23.13■■□□□ 1.29
C9orf3-222ENST00000496567 FERP16591 822 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 GNA15P30679 374 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 KRT9P35527 623 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 STILQ15468 1287 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 SFMBT2Q5VUG0 894 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 PALB2Q86YC2 1186 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 SPATA2LQ8IUW3 424 aaPredicted RBP23.12■■□□□ 1.29
C9orf3-222ENST00000496567 CNGA4Q8IV77 575 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 C12orf29Q8N999 325 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 SPPL2BQ8TCT7 592 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 MYLPFQ96A32 169 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 CYFIP2Q96F07 1278 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 PCED1BQ96HM7 432 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 FUBP3Q96I24 572 aaKnown RBP eCLIP23.12■■□□□ 1.29
C9orf3-222ENST00000496567 TMLHEQ9NVH6 421 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 AIPL1Q9NZN9 384 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 PCDHB5Q9Y5E4 795 aa23.12■■□□□ 1.29
C9orf3-222ENST00000496567 ATP8B3O60423 1300 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 MED7O43513 233 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 CLASP2O75122 1294 aaKnown RBP23.11■■□□□ 1.29
C9orf3-222ENST00000496567 GLUD1P00367 558 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 ATF2P15336 505 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 CYP27A1Q02318 531 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 ARHGAP17Q68EM7 881 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 RNF19BQ6ZMZ0 732 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 ADGRD2Q7Z7M1 963 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 SYN2Q92777 582 aaPredicted RBP23.11■■□□□ 1.29
C9orf3-222ENST00000496567 FAM49BQ9NUQ9 324 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 IMPACTQ9P2X3 320 aa23.11■■□□□ 1.29
C9orf3-222ENST00000496567 ATG2AQ2TAZ0 1938 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 MTMR11A4FU01 709 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 GOLGA6L6A8MZA4 724 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 AKR1B15C9JRZ8 316 aaPredicted RBP23.1■■□□□ 1.29
C9orf3-222ENST00000496567 TGM5O43548 720 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 ELF1P32519 619 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 PDE6CP51160 858 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 DUSP6Q16828 381 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 TSR1Q2NL82 804 aaKnown RBP23.1■■□□□ 1.29
C9orf3-222ENST00000496567 CFAP221Q4G0U5 840 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 RBM23Q86U06 439 aaKnown RBP23.1■■□□□ 1.29
C9orf3-222ENST00000496567 SLC47A2Q86VL8 602 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 PGLYRP2Q96PD5 576 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 HNRNPABQ99729 332 aaKnown RBP23.1■■□□□ 1.29
C9orf3-222ENST00000496567 LPIN3Q9BQK8 851 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 MED10Q9BTT4 135 aa23.1■■□□□ 1.29
C9orf3-222ENST00000496567 ABCB6Q9NP58 842 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms