RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 FAM84AQ96KN4 292 aa13.68□□□□□ -0.22
PTPRF-214ENST00000496043 ABCB6Q9NP58 842 aa13.68□□□□□ -0.22
PTPRF-214ENST00000496043 OBP2AQ9NY56 170 aa13.68□□□□□ -0.22
PTPRF-214ENST00000496043 USP25Q9UHP3 1055 aa13.68□□□□□ -0.22
PTPRF-214ENST00000496043 ZMYM5Q9UJ78 669 aa13.68□□□□□ -0.22
PTPRF-214ENST00000496043 GTF3C4Q9UKN8 822 aa13.68□□□□□ -0.22
PTPRF-214ENST00000496043 MYH15Q9Y2K3 1946 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 CST3P01034 146 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 FAM163BP0C2L3 166 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 CSH1P0DML2 217 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 CSH2P0DML3 217 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 DLATP10515 647 aaKnown RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 ACAT1P24752 427 aaKnown RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 FCHO2Q0JRZ9 810 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 PSMD2Q13200 908 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 FZD5Q13467 585 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 PSMD6Q15008 389 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 ARHGAP29Q52LW3 1261 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 INTS6LQ5JSJ4 861 aaKnown RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 ZC3H14Q6PJT7 736 aaKnown RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 OSTM1Q86WC4 334 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 SPATA2LQ8IUW3 424 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 ADGRF2Q8IZF7 708 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 CCDC127Q96BQ5 260 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 RSPRY1Q96DX4 576 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 PAGE5Q96GU1 130 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 SPATA32Q96LK8 384 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 MKNK1Q9BUB5 465 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 SLC46A2Q9BY10 475 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 C8orf33Q9H7E9 229 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 IL21Q9HBE4 155 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 THG1LQ9NWX6 298 aaKnown RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 FBXO4Q9UKT5 387 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 NDRG2Q9UN36 371 aaKnown RBP13.67□□□□□ -0.22
PTPRF-214ENST00000496043 PIAS3Q9Y6X2 628 aa13.67□□□□□ -0.22
PTPRF-214ENST00000496043 PTPRJQ12913 1337 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 ANK1P16157 1881 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 A0A1B0GVL5 298 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 SHISA7A6NL88 538 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 SOBPA7XYQ1 873 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 F11P03951 625 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 HMGA1P17096 107 aaKnown RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 CYP2F1P24903 491 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 DDX6P26196 483 aaKnown RBP eCLIP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 KPNA1P52294 538 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 KRT85P78386 507 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 CYP4F8P98187 520 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 CSTF1Q05048 431 aaKnown RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 CYP24A1Q07973 514 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 DDR2Q16832 855 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 BMT2Q1RMZ1 405 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 ZNF528Q3MIS6 628 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 FAM171BQ6P995 826 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 C1orf228Q6PIY5 440 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 LIMS2Q7Z4I7 341 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 C12orf56Q8IXR9 622 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 GRAMD1CQ8IYS0 662 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 MAML2Q8IZL2 1156 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 CELF5Q8N6W0 485 aaKnown RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 GOLGA5Q8TBA6 731 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 MMS19Q96T76 1030 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 PKMYT1Q99640 499 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 CGRRF1Q99675 332 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 LMAN1LQ9HAT1 526 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 EXOC1Q9NV70 894 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 MAGEC2Q9UBF1 373 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 UXTQ9UBK9 157 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 CDH9Q9ULB4 789 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 MAGED2Q9UNF1 606 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 R4GN57 208 aa13.66□□□□□ -0.22
PTPRF-214ENST00000496043 ZFHX2Q9C0A1 2572 aaPredicted RBP13.66□□□□□ -0.22
PTPRF-214ENST00000496043 MYBPHLA2RUH7 354 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 ARNTLO00327 626 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 ACTN4O43707 911 aaKnown RBP13.65□□□□□ -0.22
PTPRF-214ENST00000496043 KLRC4O43908 158 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 EXOC3O60645 756 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 LMNAP02545 664 aaKnown RBP13.65□□□□□ -0.22
PTPRF-214ENST00000496043 MYL1P05976 194 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 PDGFRBP09619 1106 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 WARSP23381 471 aaKnown RBP13.65□□□□□ -0.22
PTPRF-214ENST00000496043 CCNE1P24864 410 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 LMO2P25791 158 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 GNL1P36915 607 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-214ENST00000496043 GPR15P49685 360 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 NLRP12P59046 1061 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 PLCB2Q00722 1185 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 TRPC3Q13507 836 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 MAPRE1Q15691 268 aaKnown RBP13.65□□□□□ -0.22
PTPRF-214ENST00000496043 CFAP221Q4G0U5 840 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 SDHAF4Q5VUM1 108 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 C4orf50Q6ZRC1 276 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 SCN4BQ8IWT1 228 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 CMTM8Q8IZV2 173 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 ADSSL1Q8N142 457 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 BPIFB1Q8TDL5 484 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 MRPS31Q92665 395 aaKnown RBP13.65□□□□□ -0.22
PTPRF-214ENST00000496043 MSANTD3Q96H12 275 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 FUBP3Q96I24 572 aaKnown RBP eCLIP13.65□□□□□ -0.22
PTPRF-214ENST00000496043 LRRC3BQ96PB8 259 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 SNX25Q9H3E2 840 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms