RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 WDTC1Q8N5D0 677 aa13.44□□□□□ -0.26
VPS52-220ENST00000493674 RNF10Q8N5U6 811 aaKnown RBP13.44□□□□□ -0.26
VPS52-220ENST00000493674 OR6B3Q8NGW1 331 aa13.44□□□□□ -0.26
VPS52-220ENST00000493674 VCPIP1Q96JH7 1222 aa13.44□□□□□ -0.26
VPS52-220ENST00000493674 C16orf45Q96MC5 204 aaPredicted RBP13.44□□□□□ -0.26
VPS52-220ENST00000493674 FAM193BQ96PV7 902 aaPredicted RBP13.44□□□□□ -0.26
VPS52-220ENST00000493674 PKMYT1Q99640 499 aa13.44□□□□□ -0.26
VPS52-220ENST00000493674 SNX25Q9H3E2 840 aa13.44□□□□□ -0.26
VPS52-220ENST00000493674 SEPT11Q9NVA2 429 aaKnown RBP13.44□□□□□ -0.26
VPS52-220ENST00000493674 PCDH10Q9P2E7 1040 aa13.44□□□□□ -0.26
VPS52-220ENST00000493674 ADAM28Q9UKQ2 775 aa13.44□□□□□ -0.26
VPS52-220ENST00000493674 DUSP10Q9Y6W6 482 aa13.44□□□□□ -0.26
VPS52-220ENST00000493674 ANAPC1Q9H1A4 1944 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 SYN3O14994 580 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 MTA2O94776 668 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 MICAL2O94851 1124 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 CYP1A2P05177 515 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 MMP8P22894 467 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 OR1G1P47890 313 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 GSCP56915 257 aaPredicted RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 HTRA4P83105 476 aaPredicted RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 C1QBPQ07021 282 aaKnown RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 PTPN14Q15678 1187 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 PAN2Q504Q3 1202 aaKnown RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 NAA35Q5VZE5 725 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 CHRDL2Q6WN34 429 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 ZNF365Q70YC5 407 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 RNF168Q8IYW5 571 aaPredicted RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 MCOLN2Q8IZK6 566 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 C12orf29Q8N999 325 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 B3GALNT2Q8NCR0 500 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 RFFLQ8WZ73 363 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 HERVK_113Q902F9 699 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 ARHGEF26Q96DR7 871 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 TNIP3Q96KP6 325 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 HEXIM2Q96MH2 286 aaKnown RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 IRX2Q9BZI1 471 aaPredicted RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 AVENQ9NQS1 362 aaPredicted RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 DDX43Q9NXZ2 648 aaKnown RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 PUF60Q9UHX1 559 aaKnown RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 GTF3C4Q9UKN8 822 aa13.43□□□□□ -0.26
VPS52-220ENST00000493674 PRG3Q9Y2Y8 225 aaPredicted RBP13.43□□□□□ -0.26
VPS52-220ENST00000493674 LAMA3Q16787 3333 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 TMCO5BA8MYB1 307 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 UPP2O95045 317 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 OAZ2O95190 189 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 FGBP02675 491 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 SETSIPP0DME0 302 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 MYBL1P10243 752 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 FGFR3P22607 806 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 PCSK1P29120 753 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 GPD2P43304 727 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 NSFP46459 744 aaKnown RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 RPL34P49207 117 aaKnown RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 BCAR1P56945 870 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 MRPL58Q14197 206 aaKnown RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 PPP1R26Q5T8A7 1209 aaPredicted RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 RASIP1Q5U651 963 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 TTC30AQ86WT1 665 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 TMEM173Q86WV6 379 aaPredicted RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 PASD1Q8IV76 773 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 TMEM35BQ8NCS4 154 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 C1orf131Q8NDD1 294 aaKnown RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 HASPINQ8TF76 798 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 BCL7CQ8WUZ0 217 aaPredicted RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 CPA5Q8WXQ8 436 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 CTNNBL1Q8WYA6 563 aaPredicted RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 TRIM11Q96F44 468 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 HNRNPABQ99729 332 aaKnown RBP13.42□□□□□ -0.26
VPS52-220ENST00000493674 SYT15Q9BQS2 421 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 ACBD6Q9BR61 282 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.42□□□□□ -0.261e-7■■■■□ 22
VPS52-220ENST00000493674 COLEC11Q9BWP8 271 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 DNAI2Q9GZS0 605 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 THAP2Q9H0W7 228 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 CRTAC1Q9NQ79 661 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 CYTH4Q9UIA0 394 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 TSPAN16Q9UKR8 245 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 CDH9Q9ULB4 789 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 GUCA1BQ9UMX6 200 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 PCDHGC5Q9Y5F6 944 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 CAPN6Q9Y6Q1 641 aa13.42□□□□□ -0.26
VPS52-220ENST00000493674 SF3B1O75533 1304 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS52-220ENST00000493674 LAMA2P24043 3122 aaKnown RBP13.41□□□□□ -0.26
VPS52-220ENST00000493674 TCRBV5S1A1TA0A578 114 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 CARNS1A5YM72 827 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 M0QYV0 167 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 TRAPPC3O43617 180 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 KIF5CO60282 957 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 ATP2C2O75185 946 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 GJB5O95377 273 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 ALDH2P05091 517 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 PDGFRBP09619 1106 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 LINC00271P0C7V0 271 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 CCDC130P13994 396 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 PTPN1P18031 435 aaKnown RBP13.41□□□□□ -0.26
VPS52-220ENST00000493674 TKTP29401 623 aaKnown RBP13.41□□□□□ -0.26
VPS52-220ENST00000493674 SSTR3P32745 418 aaPredicted RBP13.41□□□□□ -0.26
VPS52-220ENST00000493674 GABRB2P47870 512 aa13.41□□□□□ -0.26
VPS52-220ENST00000493674 GPC5P78333 572 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms