RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 PPEF2O14830 753 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 SOAT2O75908 522 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 KRT19P08727 400 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 HOXA6P31267 233 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 RBP5P82980 135 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 CYP4F8P98187 520 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 AMPD3Q01432 767 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 SATB1Q01826 763 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 NR1H3Q13133 447 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 PON2Q15165 354 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 MAPRE1Q15691 268 aaKnown RBP12.45□□□□□ -0.42
COL6A3-213ENST00000493475 FBXO43Q4G163 708 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 STXBP5Q5T5C0 1151 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 C4orf50Q6ZRC1 276 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 SPATA2LQ8IUW3 424 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-213ENST00000493475 CCDC65Q8IXS2 484 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 CPA6Q8N4T0 437 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 GIPC2Q8TF65 315 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 LEO1Q8WVC0 666 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-213ENST00000493475 ANKRD36BP1Q96IX9 119 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 TDP1Q9NUW8 608 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 GTSE1Q9NYZ3 720 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 MAGED2Q9UNF1 606 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-213ENST00000493475 SRPRBQ9Y5M8 271 aaKnown RBP12.45□□□□□ -0.42
COL6A3-213ENST00000493475 GPR179Q6PRD1 2367 aa12.45□□□□□ -0.42
COL6A3-213ENST00000493475 TRAV19A0A0A6YYK7 116 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 CCDC163A0A0D9SF12 145 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 CHURC1-FNTBB4DL54 471 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 EXTL3O43909 919 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 VNN2O95498 520 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 TNNC2P02585 160 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 ITGB3P05106 788 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 CCDC192P0DO97 292 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 ATF6P18850 670 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 DRD1P21728 446 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 POLR2BP30876 1174 aaKnown RBP12.44□□□□□ -0.42
COL6A3-213ENST00000493475 FNTBP49356 437 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 SPEM2Q0P670 501 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 RUNX3Q13761 415 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 CSRP2Q16527 193 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 LPAL2Q16609 132 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 HEATR6Q6AI08 1181 aaKnown RBP12.44□□□□□ -0.42
COL6A3-213ENST00000493475 IL31Q6EBC2 164 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 SLC39A4Q6P5W5 647 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 DPH6Q7L8W6 267 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 WDR5BQ86VZ2 330 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 BRSK2Q8IWQ3 736 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 CSGALNACT2Q8N6G5 542 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 TTC9BQ8N6N2 239 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 TOP6BLQ8N6T0 577 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 MAB21L3Q8N8X9 362 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 C12orf50Q8NA57 414 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-213ENST00000493475 TTC8Q8TAM2 541 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 FUBP3Q96I24 572 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL6A3-213ENST00000493475 EPSTI1Q96J88 318 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 CEP295NLQ96MC4 621 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 FIZ1Q96SL8 496 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 ZSCAN16Q9H4T2 348 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-213ENST00000493475 KIAA1586Q9HCI6 787 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 GKN1Q9NS71 199 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 DDX43Q9NXZ2 648 aaKnown RBP12.44□□□□□ -0.42
COL6A3-213ENST00000493475 AGAP1Q9UPQ3 857 aa12.44□□□□□ -0.42
COL6A3-213ENST00000493475 DMXL1Q9Y485 3027 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 MED19A0JLT2 244 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-213ENST00000493475 SHISA7A6NL88 538 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 CKMP06732 381 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 USP17L7P0C7H9 530 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 TDGF1P13385 188 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 ANXA13P27216 316 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 SOX9P48436 509 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 IFNAR2P48551 515 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 VASPP50552 380 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-213ENST00000493475 ATXN1P54253 815 aaKnown RBP12.43□□□□□ -0.42
COL6A3-213ENST00000493475 NLRP12P59046 1061 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 CCINQ13939 588 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 ZNF268Q14587 947 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-213ENST00000493475 KCNB1Q14721 858 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 INTS6LQ5JSJ4 861 aaKnown RBP12.43□□□□□ -0.42
COL6A3-213ENST00000493475 CACNA2D4Q7Z3S7 1137 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 MON1AQ86VX9 555 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 CAMKK1Q8N5S9 505 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 ATP2A3Q93084 1043 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 ACDQ96AP0 544 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 RSPRY1Q96DX4 576 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 TRMT2BQ96GJ1 504 aaKnown RBP12.43□□□□□ -0.42
COL6A3-213ENST00000493475 LOXL4Q96JB6 756 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 ZFYVE19Q96K21 471 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 PI4K2AQ9BTU6 479 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 SLC46A2Q9BY10 475 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 SEMA4GQ9NTN9 838 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 RBM12Q9NTZ6 932 aaKnown RBP12.43□□□□□ -0.42
COL6A3-213ENST00000493475 PANK4Q9NVE7 773 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 SNX9Q9Y5X1 595 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 TICRRQ7Z2Z1 1910 aa12.43□□□□□ -0.42
COL6A3-213ENST00000493475 DCHS1Q96JQ0 3298 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 NCOR2Q9Y618 2525 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 ZNF233A6NK53 670 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 RPP40O75818 363 aaKnown RBP12.42□□□□□ -0.42
COL6A3-213ENST00000493475 PPP1R37O75864 691 aa12.42□□□□□ -0.42
COL6A3-213ENST00000493475 AKAP3O75969 853 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms