RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 CFAP45Q9UL16 551 aa24.28■■□□□ 1.48
PTPN4-211ENST00000488279 ARHGAP29Q52LW3 1261 aa24.27■■□□□ 1.48
PTPN4-211ENST00000488279 INTS6LQ5JSJ4 861 aaKnown RBP24.27■■□□□ 1.48
PTPN4-211ENST00000488279 LMBRD2Q68DH5 695 aaPredicted RBP24.27■■□□□ 1.48
PTPN4-211ENST00000488279 UNC13DQ70J99 1090 aa24.27■■□□□ 1.48
PTPN4-211ENST00000488279 LEO1Q8WVC0 666 aaPredicted RBP24.27■■□□□ 1.48
PTPN4-211ENST00000488279 HPDLQ96IR7 371 aa24.27■■□□□ 1.48
PTPN4-211ENST00000488279 SLC46A2Q9BY10 475 aa24.27■■□□□ 1.48
PTPN4-211ENST00000488279 ABCB6Q9NP58 842 aa24.27■■□□□ 1.48
PTPN4-211ENST00000488279 PCDHA7Q9UN72 937 aa24.27■■□□□ 1.48
PTPN4-211ENST00000488279 PCDHGA2Q9Y5H1 932 aa24.27■■□□□ 1.48
PTPN4-211ENST00000488279 MIA3Q5JRA6 1907 aa24.27■■□□□ 1.48
PTPN4-211ENST00000488279 CSH1P0DML2 217 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 CSH2P0DML3 217 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 ACAT1P24752 427 aaKnown RBP24.26■■□□□ 1.47
PTPN4-211ENST00000488279 PCSK1P29120 753 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 SNRPFP62306 86 aaKnown RBP24.26■■□□□ 1.47
PTPN4-211ENST00000488279 RPL10AP62906 217 aaKnown RBP24.26■■□□□ 1.47
PTPN4-211ENST00000488279 MAMSTRQ6ZN01 415 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 DPH6Q7L8W6 267 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 ADGRF2Q8IZF7 708 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 OR5B17Q8NGF7 314 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 BPIFB1Q8TDL5 484 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 IER2Q9BTL4 223 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 CHRDQ9H2X0 955 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 THG1LQ9NWX6 298 aaKnown RBP24.26■■□□□ 1.47
PTPN4-211ENST00000488279 ZSCAN32Q9NX65 697 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 GTF3C4Q9UKN8 822 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 TSC2P49815 1807 aa24.26■■□□□ 1.47
PTPN4-211ENST00000488279 GABRDO14764 452 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 TGFB1I1O43294 461 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 HMGA1P17096 107 aaKnown RBP24.25■■□□□ 1.47
PTPN4-211ENST00000488279 NLRP12P59046 1061 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 PLCB2Q00722 1185 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 SNRNP35Q16560 246 aaKnown RBP24.25■■□□□ 1.47
PTPN4-211ENST00000488279 SOWAHAQ2M3V2 549 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 WDR49Q8IV35 697 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 CMTM8Q8IZV2 173 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 CELF5Q8N6W0 485 aaKnown RBP24.25■■□□□ 1.47
PTPN4-211ENST00000488279 RDH13Q8NBN7 331 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 ZFYVE19Q96K21 471 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 AGPAT3Q9NRZ7 376 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 MAGED2Q9UNF1 606 aaPredicted RBP24.25■■□□□ 1.47
PTPN4-211ENST00000488279 F5P12259 2224 aa24.25■■□□□ 1.47
PTPN4-211ENST00000488279 SLC38A8A6NNN8 435 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 PRAMEF12O95522 483 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 F11P03951 625 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 CHRNB1P11230 501 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 CYP2F1P24903 491 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 DDX6P26196 483 aaKnown RBP eCLIP24.24■■□□□ 1.47
PTPN4-211ENST00000488279 GPR15P49685 360 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 PPP2R5DQ14738 602 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 DDR2Q16832 855 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 RESP18Q5W5W9 173 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 TSSK4Q6SA08 328 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 HS2ST1Q7LGA3 356 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 OSTM1Q86WC4 334 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 SPATA2LQ8IUW3 424 aaPredicted RBP24.24■■□□□ 1.47
PTPN4-211ENST00000488279 MAB21L3Q8N8X9 362 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 SCFD1Q8WVM8 642 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 PKMYT1Q99640 499 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 HINFPQ9BQA5 517 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 FAM126AQ9BYI3 521 aaPredicted RBP24.24■■□□□ 1.47
PTPN4-211ENST00000488279 BLZF1Q9H2G9 400 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 PRMT8Q9NR22 394 aaPredicted RBP24.24■■□□□ 1.47
PTPN4-211ENST00000488279 UBE4BO95155 1302 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 PTPRJQ12913 1337 aa24.24■■□□□ 1.47
PTPN4-211ENST00000488279 ZNF292O60281 2723 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 PVALEFA0A1B0GWK0 134 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 MYBPHLA2RUH7 354 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 SOBPA7XYQ1 873 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 CLIC2O15247 247 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 DLATP10515 647 aaKnown RBP24.23■■□□□ 1.47
PTPN4-211ENST00000488279 CASP1P29466 404 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 AVPR1AP37288 418 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 AFMP43652 599 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 EHHADHQ08426 723 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 TMEM150AQ86TG1 271 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 RALGPS2Q86X27 583 aaPredicted RBP24.23■■□□□ 1.47
PTPN4-211ENST00000488279 NELFCDQ8IXH7 590 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 SPRYD3Q8NCJ5 442 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 ZBTB44Q8NCP5 570 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 RUBCNQ92622 972 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 MRPS31Q92665 395 aaKnown RBP24.23■■□□□ 1.47
PTPN4-211ENST00000488279 FNBP1Q96RU3 617 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 SMG9Q9H0W8 520 aaKnown RBP24.23■■□□□ 1.47
PTPN4-211ENST00000488279 GTSE1Q9NYZ3 720 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 UXTQ9UBK9 157 aaPredicted RBP24.23■■□□□ 1.47
PTPN4-211ENST00000488279 RCOR1Q9UKL0 485 aa24.23■■□□□ 1.47
PTPN4-211ENST00000488279 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.22■■□□□ 1.47
PTPN4-211ENST00000488279 SPECC1L-ADORA2AF8WAN1 911 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 TNNI1P19237 187 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 SOX9P48436 509 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 CYP2J2P51589 502 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 DNM1Q05193 864 aaKnown RBP24.22■■□□□ 1.47
PTPN4-211ENST00000488279 PKP1Q13835 747 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 LRRC32Q14392 662 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 CFAP221Q4G0U5 840 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 SDHAF4Q5VUM1 108 aa24.22■■□□□ 1.47
PTPN4-211ENST00000488279 TRAPPC11Q7Z392 1133 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms