RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GGT7Q9UJ14 662 aa11.55□□□□□ -0.56
HDAC6-228ENST00000486227 HAUS5O94927 633 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 GNL1P36915 607 aaPredicted RBP11.54□□□□□ -0.56
HDAC6-228ENST00000486227 SULT1E1P49888 294 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 CUL3Q13618 768 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 GOLGA7BQ2TAP0 167 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 MIIPQ5JXC2 388 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 TMEM139Q8IV31 216 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 ZC3H15Q8WU90 426 aaKnown RBP11.54□□□□□ -0.56
HDAC6-228ENST00000486227 FARP1Q9Y4F1 1045 aaPredicted RBP11.54□□□□□ -0.56
HDAC6-228ENST00000486227 CXCL8P10145 99 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 ZFXP17010 805 aaPredicted RBP11.54□□□□□ -0.56
HDAC6-228ENST00000486227 OR1G1P47890 313 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 NOGQ13253 232 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 SYDE1Q6ZW31 735 aaPredicted RBP11.54□□□□□ -0.56
HDAC6-228ENST00000486227 RAB6BQ9NRW1 208 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 DDX20Q9UHI6 824 aaKnown RBP11.54□□□□□ -0.56
HDAC6-228ENST00000486227 DDX3XO00571 662 aaKnown RBP eCLIP11.54□□□□□ -0.561e-8■■■■□ 23.1
HDAC6-228ENST00000486227 GPR182O15218 404 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 APRTP07741 180 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 RBP3P10745 1247 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 COILP38432 576 aaPredicted RBP11.54□□□□□ -0.56
HDAC6-228ENST00000486227 HDAC11Q96DB2 347 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 TMEM169Q96HH4 297 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 OLFM3Q96PB7 478 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 CISHQ9NSE2 258 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 SETD4Q9NVD3 440 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 BFARQ9NZS9 450 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 PRRG1O14668 218 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 NQO1P15559 274 aaKnown RBP11.54□□□□□ -0.56
HDAC6-228ENST00000486227 GRIK1P39086 918 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 RANBP1P43487 201 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 TMPRSS15P98073 1019 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 PPIL2Q13356 520 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 TMEM132BQ14DG7 1078 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 NPY5RQ15761 445 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 KYNUQ16719 465 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 MOB2Q70IA6 237 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 FUKQ8N0W3 1084 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 ATG4AQ8WYN0 398 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 FIS1Q9Y3D6 152 aa11.54□□□□□ -0.56
HDAC6-228ENST00000486227 NEMP1O14524 444 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 SPAG7O75391 227 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ATP6V1G2O95670 118 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 COPS2P61201 443 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 MEI1Q5TIA1 1274 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 TRMT10CQ7L0Y3 403 aaKnown RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 MAP4K3Q8IVH8 894 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 SPATA18Q8TC71 538 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 MAML1Q92585 1016 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 FSD1LQ9BXM9 530 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ABHD16BQ9H3Z7 469 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 UBQLN1Q9UMX0 589 aaKnown RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 G3BP2Q9UN86 482 aaKnown RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ADCY3O60266 1144 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 DNAJC8O75937 253 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 GLI1P08151 1106 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 GPD1P21695 349 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 UBA1P22314 1058 aaKnown RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ADORA2AP29274 412 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ALDH7A1P49419 539 aaKnown RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ACOT1Q86TX2 421 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 LRRC34Q8IZ02 419 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 MDM1Q8TC05 714 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 MIEF2Q96C03 454 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 STAMBPL1Q96FJ0 436 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 MED15Q96RN5 788 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 OSMRQ99650 979 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 VPS11Q9H270 941 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 DNAJC18Q9H819 358 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ATP11BQ9Y2G3 1177 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 NEU2Q9Y3R4 380 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 S100BP04271 92 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 PCSK1P29120 753 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 SESN2P58004 480 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 PPP3CAQ08209 521 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 LONRF1Q17RB8 773 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 SV2CQ496J9 727 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 DCAF6Q58WW2 860 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 RGMBQ6NW40 437 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 DCP1BQ8IZD4 617 aaKnown RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 KIF2BQ8N4N8 673 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 REPS2Q8NFH8 660 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 SH3TC2Q8TF17 1288 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 HDAC7Q8WUI4 952 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 KAT5Q92993 513 aa11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ROPN1BQ9BZX4 212 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 ROPN1Q9HAT0 212 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 CACYBPQ9HB71 228 aaKnown RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 HMX1Q9NP08 348 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-228ENST00000486227 A0A0G2JND7 137 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 PMLP29590 882 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 PPARGP37231 505 aaPredicted RBP11.52□□□□□ -0.56
HDAC6-228ENST00000486227 RAP1GAPP47736 663 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 TAF6P49848 677 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 TPD52P55327 224 aaPredicted RBP11.52□□□□□ -0.56
HDAC6-228ENST00000486227 TPI1P60174 286 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 DLG4P78352 724 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 STAT4Q14765 748 aa11.52□□□□□ -0.56
HDAC6-228ENST00000486227 DCAF4L1Q3SXM0 396 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms