RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 TMC2Q8TDI7 906 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 FGF13Q92913 245 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 SENP8Q96LD8 212 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 ZNF560Q96MR9 790 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 SLC2A4RGQ9NR83 387 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 DNMT3BQ9UBC3 853 aaKnown RBP18.25■□□□□ 0.51
VIM-205ENST00000485947 INSL5Q9Y5Q6 135 aa18.25■□□□□ 0.51
VIM-205ENST00000485947 ZFHX2Q9C0A1 2572 aaPredicted RBP18.25■□□□□ 0.51
VIM-205ENST00000485947 ZNF233A6NK53 670 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 TEX33O43247 280 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 STX10O60499 249 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 AFPP02771 609 aaKnown RBP18.24■□□□□ 0.51
VIM-205ENST00000485947 AVPR2P30518 371 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 ARPP19P56211 112 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 ADCY1Q08828 1119 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 SV2CQ496J9 727 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 SPECC1LQ69YQ0 1117 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 METTL23Q86XA0 190 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 PRSS33Q8NF86 280 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 SPATA18Q8TC71 538 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 SLC35C1Q96A29 364 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 SAAL1Q96ER3 474 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 ERGIC2Q96RQ1 377 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 FAM213AQ9BRX8 229 aa18.24■□□□□ 0.51
VIM-205ENST00000485947 RBAKQ9NYW8 714 aaPredicted RBP18.24■□□□□ 0.51
VIM-205ENST00000485947 MRPS23Q9Y3D9 190 aaKnown RBP18.24■□□□□ 0.51
VIM-205ENST00000485947 GOLGA8IPA6NC78 632 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 GOLGA8JA6NMD2 632 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 RHOP08100 348 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 VAMP7P51809 220 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 PTPN5P54829 565 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 CYP24A1Q07973 514 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 KCNH2Q12809 1159 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 TRIM14Q14142 442 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 DCAF17Q5H9S7 520 aaPredicted RBP18.23■□□□□ 0.51
VIM-205ENST00000485947 CYP4A22Q5TCH4 519 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 TCERG1LQ5VWI1 586 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 TMC6Q7Z403 805 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 CBWD2Q8IUF1 395 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 THEM5Q8N1Q8 247 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 LRRC52Q8N7C0 313 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 RDH13Q8NBN7 331 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 C2orf15Q8WU43 125 aaKnown RBP18.23■□□□□ 0.51
VIM-205ENST00000485947 IQCDQ96DY2 449 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 ZNF512Q96ME7 567 aaPredicted RBP18.23■□□□□ 0.51
VIM-205ENST00000485947 MFSD1Q9H3U5 465 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 FBXL21Q9UKT6 434 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 ITGA11Q9UKX5 1188 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 ASB3Q9Y575 518 aa18.23■□□□□ 0.51
VIM-205ENST00000485947 GTPBP10A4D1E9 387 aaKnown RBP18.22■□□□□ 0.51
VIM-205ENST00000485947 KPNA7A9QM74 516 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 SEC24AO95486 1093 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 GUCY2FP51841 1108 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 EPHA5P54756 1037 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 FOXK2Q01167 660 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 ASTLQ6HA08 431 aaPredicted RBP18.22■□□□□ 0.51
VIM-205ENST00000485947 NPAS3Q8IXF0 933 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 EFCAB13Q8IY85 973 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 RTP3Q9BQQ7 232 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 GPR88Q9GZN0 384 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.22■□□□□ 0.51
VIM-205ENST00000485947 DOCK8Q8NF50 2099 aa18.22■□□□□ 0.51
VIM-205ENST00000485947 CYB561D2O14569 222 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 PPEF2O14830 753 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 SPTLC1O15269 473 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 P4HA2O15460 535 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 PTMAP06454 111 aaKnown RBP18.21■□□□□ 0.51
VIM-205ENST00000485947 TUFMP49411 452 aaKnown RBP18.21■□□□□ 0.51
VIM-205ENST00000485947 GSDMDP57764 484 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 NTHL1P78549 312 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 TFAMQ00059 246 aaKnown RBP18.21■□□□□ 0.51
VIM-205ENST00000485947 PSMD6Q15008 389 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 RNF19BQ6ZMZ0 732 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 PDZD4Q76G19 769 aaPredicted RBP18.21■□□□□ 0.51
VIM-205ENST00000485947 SPC24Q8NBT2 197 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 ZSWIM2Q8NEG5 633 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 PARD3BQ8TEW8 1205 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 TIMM13Q9Y5L4 95 aaPredicted RBP18.21■□□□□ 0.51
VIM-205ENST00000485947 NUMBLQ9Y6R0 609 aa18.21■□□□□ 0.51
VIM-205ENST00000485947 RIF1Q5UIP0 2472 aaKnown RBP18.21■□□□□ 0.5
VIM-205ENST00000485947 PMM2O15305 246 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 ECI2O75521 394 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 FGF19O95750 216 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 GTF2H1P32780 548 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 ALDH1A3P47895 512 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 EPHB3P54753 998 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 RBP5P82980 135 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 PFKPQ01813 784 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 PRSS36Q5K4E3 855 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 IER5LQ5T953 404 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 PHLDB3Q6NSJ2 640 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 TMEM86AQ8N2M4 240 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 ITFG1Q8TB96 612 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 RSAD2Q8WXG1 361 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 SHDQ96IW2 340 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 NUP58Q9BVL2 599 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 ASAH2Q9NR71 780 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 HCFC1R1Q9NWW0 138 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 GDAP2Q9NXN4 497 aa18.2■□□□□ 0.5
VIM-205ENST00000485947 R3HCC1Q9Y3T6 440 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms