RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 IGBP1P78318 339 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 TFF2Q03403 129 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 CHRNEQ04844 493 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 DUSP4Q13115 394 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 ITGB3BPQ13352 177 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 SMAD4Q13485 552 aaKnown RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 GPM6BQ13491 265 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 BTG3Q14201 252 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 PLCB4Q15147 1175 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 TCTN1Q2MV58 587 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 BBS9Q3SYG4 887 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 SEZ6Q53EL9 994 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 TMEM31Q5JXX7 168 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 MARCH8Q5T0T0 291 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 MTHFD1LQ6UB35 978 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 ABHD15Q6UXT9 468 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.68□□□□□ -1.665e-8■■□□□ 12.9
VPS13D-206ENST00000476045 RUFY4Q6ZNE9 571 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 PLA2G4DQ86XP0 818 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 KSR1Q8IVT5 923 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 CCDC60Q8IWA6 550 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 EXOC8Q8IYI6 725 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 LRRC43Q8N309 656 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF655Q8N720 491 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 ANKS4BQ8N8V4 417 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 RBBP8NLQ8NC74 664 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 FBXO15Q8NCQ5 510 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 NSUN7Q8NE18 718 aaKnown RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 NEK9Q8TD19 979 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 DNAJB3Q8WWF6 145 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 RNF34Q969K3 372 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF689Q96CS4 500 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 CDCA3Q99618 268 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 C17orf80Q9BSJ5 609 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF577Q9BSK1 485 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 MRPL9Q9BYD2 267 aaKnown RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 CELF4Q9BZC1 486 aaKnown RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 SCAND2PQ9GZW5 306 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 FAM49AQ9H0Q0 323 aaPredicted RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 KCNH6Q9H252 994 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 PDCL3Q9H2J4 239 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 ELAC1Q9H777 363 aaKnown RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 CD320Q9NPF0 282 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF302Q9NR11 478 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 DDX19AQ9NUU7 478 aaKnown RBP4.68□□□□□ -1.66
VPS13D-206ENST00000476045 LZTS1Q9Y250 596 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 PCDHA10Q9Y5I2 948 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 WDR87Q6ZQQ6 2873 aa4.68□□□□□ -1.66
VPS13D-206ENST00000476045 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-206ENST00000476045 TMEM82A0PJX8 343 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 GAS7O60861 476 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 RPS6KA5O75582 802 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 DEXIO95424 95 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 CTDNEP1O95476 244 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 TPM3P06753 285 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 LINC00271P0C7V0 271 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 IMPDH2P12268 514 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 SFPQP23246 707 aaKnown RBP eCLIP4.67□□□□□ -1.66
VPS13D-206ENST00000476045 GLDCP23378 1020 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 CD52P31358 61 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 GBP1P32455 592 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 PLA2G5P39877 138 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 RAB27AP51159 221 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 HK2P52789 917 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 CRYBB1P53674 252 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-206ENST00000476045 PRKCEQ02156 737 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 LRMPQ12912 555 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 BMS1Q14692 1282 aaKnown RBP4.67□□□□□ -1.66
VPS13D-206ENST00000476045 PCBP1Q15365 356 aaKnown RBP eCLIP4.67□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF124Q15973 351 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 PKN1Q16512 942 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 TCEAL5Q5H9L2 206 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 LCE1DQ5T752 114 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 C11orf57Q6ZUT1 292 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-206ENST00000476045 SLC24A5Q71RS6 500 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 CCDC186Q7Z3E2 898 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF410Q86VK4 478 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 ADHFE1Q8IWW8 467 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 FAM178BQ8IXR5 827 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 OXR1Q8N573 874 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 FSIP1Q8NA03 581 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 MYRIPQ8NFW9 859 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 KIAA1524Q8TCG1 905 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 WASF1Q92558 559 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF396Q96N95 335 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-206ENST00000476045 PCYT2Q99447 389 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 SLC38A3Q99624 504 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 SPON2Q9BUD6 331 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 TEKT3Q9BXF9 490 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 TRIM5Q9C035 493 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 RNF32Q9H0A6 362 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 GOLPH3LQ9H4A5 285 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 ZSCAN16Q9H4T2 348 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-206ENST00000476045 CCSER2Q9H7U1 834 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 ERVK-5Q9HDB9 667 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 SPTLC3Q9NUV7 552 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 TMEM161AQ9NX61 479 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 PADI3Q9ULW8 664 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 PCDHB12Q9Y5F1 795 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 MTCL1Q9Y4B5 1905 aaKnown RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms