RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 RIF1Q5UIP0 2472 aaKnown RBP15.15■□□□□ 0.02
UPF3A-204ENST00000475218 ATP2C2O75185 946 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 CMA1P23946 247 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 FCHO2Q0JRZ9 810 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 SMARCB1Q12824 385 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 UBXN2BQ14CS0 331 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 PSMD6Q15008 389 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 WDR44Q5JSH3 913 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 SDHAF4Q5VUM1 108 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 TRAPPC11Q7Z392 1133 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 C1orf210Q8IVY1 113 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 DCP1BQ8IZD4 617 aaKnown RBP15.15■□□□□ 0.02
UPF3A-204ENST00000475218 ADGRF2Q8IZF7 708 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 TMEM86AQ8N2M4 240 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 TOP6BLQ8N6T0 577 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 DEPDC1BQ8WUY9 529 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 HPDLQ96IR7 371 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 GPR88Q9GZN0 384 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 ATXN3LQ9H3M9 355 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 SLITRK6Q9H5Y7 841 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 KIAA1586Q9HCI6 787 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 GTF3C4Q9UKN8 822 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 PCDHB5Q9Y5E4 795 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 PTPRDP23468 1912 aa15.15■□□□□ 0.02
UPF3A-204ENST00000475218 GREB1Q4ZG55 1949 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 FAM237AA0A1B0GTK4 181 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 MYBPHLA2RUH7 354 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 HUS1O60921 280 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 TADA3O75528 432 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 F11P03951 625 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 SP9P0CG40 484 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 CYP2F1P24903 491 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 LMO2P25791 158 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 KNOP1Q1ED39 458 aaKnown RBP15.14■□□□□ 0.01
UPF3A-204ENST00000475218 DUOXA2Q1HG44 320 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 GPR158Q5T848 1215 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 ITIH5Q86UX2 942 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 XXYLT1Q8NBI6 393 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 ANKRD36BP1Q96IX9 119 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 SLC46A2Q9BY10 475 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 DCHS1Q96JQ0 3298 aa15.14■□□□□ 0.01
UPF3A-204ENST00000475218 PRR29P0C7W0 189 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 CASP4P49662 377 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 SURF1Q15526 300 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 KMT5BQ4FZB7 885 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 FAM171BQ6P995 826 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 RIN3Q8TB24 985 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 FAM200AQ8TCP9 573 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 CGRRF1Q99675 332 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 SMG9Q9H0W8 520 aaKnown RBP15.13■□□□□ 0.01
UPF3A-204ENST00000475218 KCTD10Q9H3F6 313 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 ABCB6Q9NP58 842 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 CRTAC1Q9NQ79 661 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 DMAC2Q9NW81 257 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 R4GN57 208 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 TNNC2P02585 160 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 DLATP10515 647 aaKnown RBP15.13■□□□□ 0.01
UPF3A-204ENST00000475218 WEE1P30291 646 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 NDUFA8P51970 172 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 NLRP12P59046 1061 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 SNRPFP62306 86 aaKnown RBP15.13■□□□□ 0.01
UPF3A-204ENST00000475218 TSPY1Q01534 308 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 VEPH1Q14D04 833 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 NFE2Q16621 373 aaPredicted RBP15.13■□□□□ 0.01
UPF3A-204ENST00000475218 DDR2Q16832 855 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 ZNF852Q6ZMS4 543 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 CEP57L1Q8IYX8 460 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 SPATA18Q8TC71 538 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 IRF7Q92985 503 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 CCDC127Q96BQ5 260 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 ZFYVE19Q96K21 471 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 XYLT2Q9H1B5 865 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 GOLPH3LQ9H4A5 285 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 TASP1Q9H6P5 420 aa15.13■□□□□ 0.01
UPF3A-204ENST00000475218 GVINP1Q7Z2Y8 2422 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 ZNF263O14978 683 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 PRPF40AO75400 957 aaKnown RBP15.12■□□□□ 0.01
UPF3A-204ENST00000475218 FGF19O95750 216 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 PSMC1P62191 440 aaKnown RBP15.12■□□□□ 0.01
UPF3A-204ENST00000475218 MYL7Q01449 175 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 CFAP221Q4G0U5 840 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 DPH6Q7L8W6 267 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 SPATA32Q96LK8 384 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 MRPL45Q9BRJ2 306 aaKnown RBP15.12■□□□□ 0.01
UPF3A-204ENST00000475218 PIAS3Q9Y6X2 628 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 FAM186AA6NE01 2351 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 ANAPC1Q9H1A4 1944 aa15.12■□□□□ 0.01
UPF3A-204ENST00000475218 CHADO15335 359 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 NOL4O94818 638 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 WARSP23381 471 aaKnown RBP15.11■□□□□ 0.01
UPF3A-204ENST00000475218 CDC25CP30307 473 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 RPS9P46781 194 aaKnown RBP15.11■□□□□ 0.01
UPF3A-204ENST00000475218 SOX9P48436 509 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 LHX1P48742 406 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 MYO1EQ12965 1108 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 TXNDC11Q6PKC3 985 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 HS2ST1Q7LGA3 356 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 TMEM174Q8WUU8 243 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 E2F7Q96AV8 911 aa15.11■□□□□ 0.01
UPF3A-204ENST00000475218 ELMO3Q96BJ8 720 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms