RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 WRNIP1Q96S55 665 aa3.68□□□□□ -1.82
UBR3-208ENST00000474426 TXN2Q99757 166 aa3.68□□□□□ -1.82
UBR3-208ENST00000474426 NUP85Q9BW27 656 aa3.68□□□□□ -1.82
UBR3-208ENST00000474426 LRRC4BQ9NT99 713 aa3.68□□□□□ -1.82
UBR3-208ENST00000474426 INTS7Q9NVH2 962 aaKnown RBP3.68□□□□□ -1.82
UBR3-208ENST00000474426 EURLQ9NYK6 297 aa3.68□□□□□ -1.82
UBR3-208ENST00000474426 AFF4Q9UHB7 1163 aaKnown RBP3.68□□□□□ -1.82
UBR3-208ENST00000474426 DACH1Q9UI36 760 aa3.68□□□□□ -1.82
UBR3-208ENST00000474426 RUVBL1Q9Y265 456 aaKnown RBP3.68□□□□□ -1.82
UBR3-208ENST00000474426 USP19O94966 1318 aa3.68□□□□□ -1.82
UBR3-208ENST00000474426 SBNO1A3KN83 1393 aa3.68□□□□□ -1.82
UBR3-208ENST00000474426 TTC26A0AVF1 554 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TRIM77I1YAP6 450 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PROM1O43490 865 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ADAM11O75078 769 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 RNF40O75150 1001 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 NDUFS6O75380 124 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 H2AFXP16104 143 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 EIF2S2P20042 333 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 GNA15P30679 374 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 EIF4A3P38919 411 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 GFPT1Q06210 699 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 CDK18Q07002 472 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 C1QBPQ07021 282 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 DMC1Q14565 340 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PTPAQ15257 358 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 MAP3K11Q16584 847 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 YOD1Q5VVQ6 348 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 TCERG1LQ5VWI1 586 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 GRAMD4Q6IC98 578 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TAF2Q6P1X5 1199 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TTC23LQ6PF05 361 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 DCLRE1AQ6PJP8 1040 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 FOXR2Q6PJQ5 311 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 B3GNT9Q6UX72 402 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 UNC13DQ70J99 1090 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PLEKHH3Q7Z736 793 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 CCDC50Q8IVM0 306 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ANKFN1Q8N957 763 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 DENND6BQ8NEG7 585 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 SLC44A1Q8WWI5 657 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PMEPA1Q969W9 287 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ANAPC16Q96DE5 110 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 RRP36Q96EU6 259 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 NGLY1Q96IV0 654 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ZNF560Q96MR9 790 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PHF12Q96QT6 1004 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 NDNQ99608 321 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TTC1Q99614 292 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PACSIN1Q9BY11 444 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TRIT1Q9H3H1 467 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 CCDC86Q9H6F5 360 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 UBA2Q9UBT2 640 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 ENOPH1Q9UHY7 261 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ADAM21Q9UKJ8 722 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PPT2Q9UMR5 302 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ANKRD34BA5PLL1 514 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 DBX1A6NMT0 343 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TK2O00142 265 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 SYN3O14994 580 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 SMIM24O75264 130 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 F13A1P00488 732 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 LRG1P02750 347 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PSAPP07602 524 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PFKMP08237 780 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 DLDP09622 509 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 SYN1P17600 705 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 POLR2CP19387 275 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 M6PRP20645 277 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 LIG3P49916 1009 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 AFF3P51826 1226 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 METAP1P53582 386 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 NCOA4Q13772 614 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TRIM25Q14258 630 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 SMTNL2Q2TAL5 461 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 SPATS1Q496A3 300 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 SYDE2Q5VT97 1194 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 HAUS3Q68CZ6 603 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 SLC25A24Q6NUK1 477 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ERMP1Q7Z2K6 904 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ZNF677Q86XU0 584 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 KSR1Q8IVT5 923 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ST13P4Q8IZP2 240 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 EHBP1Q8NDI1 1231 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 FANK1Q8TC84 345 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 WDR60Q8WVS4 1066 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 IFT81Q8WYA0 676 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 MSANTD3Q96H12 275 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 IFT74Q96LB3 600 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 OPALINQ96PE5 141 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 FCRL4Q96PJ5 515 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 BBS2Q9BXC9 721 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 TRIM2Q9C040 744 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 ZCCHC2Q9C0B9 1178 aaKnown RBP3.67□□□□□ -1.82
UBR3-208ENST00000474426 AZI2Q9H6S1 392 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 C19orf44Q9H6X5 657 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 PIDD1Q9HB75 910 aa3.67□□□□□ -1.82
UBR3-208ENST00000474426 SARS2Q9NP81 518 aaKnown RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms