RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 PCSK1P29120 753 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 PTPN5P54829 565 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 PNOCQ13519 176 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 SNW1Q13573 536 aaKnown RBP19.22■□□□□ 0.67
UPF3A-203ENST00000474056 VEPH1Q14D04 833 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 SDHAF4Q5VUM1 108 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 VITQ6UXI7 678 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 MMS19Q96T76 1030 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 MKNK1Q9BUB5 465 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 ATXN3LQ9H3M9 355 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 IL21Q9HBE4 155 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 TRAF3IP3Q9Y228 551 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 F5P12259 2224 aa19.22■□□□□ 0.67
UPF3A-203ENST00000474056 MYBPHLA2RUH7 354 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 GOLGA6L4A6NEF3 574 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 CALUO43852 315 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-203ENST00000474056 ATP2C2O75185 946 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 KIF20AO95235 890 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 CYP2F1P24903 491 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 VIPR2P41587 438 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 NUBP1P53384 320 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 MYL6P60660 151 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 PSMC1P62191 440 aaKnown RBP19.21■□□□□ 0.67
UPF3A-203ENST00000474056 DLG4P78352 724 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 CYP4F8P98187 520 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 TRPC3Q13507 836 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 MLF2Q15773 248 aaPredicted RBP19.21■□□□□ 0.67
UPF3A-203ENST00000474056 TDRD10Q5VZ19 366 aaKnown RBP19.21■□□□□ 0.67
UPF3A-203ENST00000474056 CEP135Q66GS9 1140 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 ENGASEQ8NFI3 743 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 SYT15Q9BQS2 421 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 MRPL45Q9BRJ2 306 aaKnown RBP19.21■□□□□ 0.67
UPF3A-203ENST00000474056 GPR88Q9GZN0 384 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 NME7Q9Y5B8 376 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 CACNA1IQ9P0X4 2223 aa19.21■□□□□ 0.67
UPF3A-203ENST00000474056 PHACTR2O75167 634 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 STARD6P59095 220 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 TNNC1P63316 161 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 CLDN10P78369 228 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 PFKPQ01813 784 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 BIRC3Q13489 604 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 TAF12Q16514 161 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 WDR72Q3MJ13 1102 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 SLC44A4Q53GD3 710 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 PHLDB3Q6NSJ2 640 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 FAM171BQ6P995 826 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 GUF1Q8N442 669 aaKnown RBP19.2■□□□□ 0.66
UPF3A-203ENST00000474056 RSPRY1Q96DX4 576 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 FOXQ1Q9C009 403 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 XYLT2Q9H1B5 865 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 TRPV4Q9HBA0 871 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 ABCB6Q9NP58 842 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 CRTAC1Q9NQ79 661 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 CDH9Q9ULB4 789 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 PATJQ8NI35 1801 aa19.2■□□□□ 0.66
UPF3A-203ENST00000474056 HEPACAM2A8MVW5 462 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 FGF19O95750 216 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 STAU1O95793 577 aaKnown RBP19.19■□□□□ 0.66
UPF3A-203ENST00000474056 C4BPAP04003 597 aaKnown RBP19.19■□□□□ 0.66
UPF3A-203ENST00000474056 PDGFRBP09619 1106 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 HMGA1P17096 107 aaKnown RBP19.19■□□□□ 0.66
UPF3A-203ENST00000474056 PSMC3P17980 439 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 NR2F2P24468 414 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 CDC25CP30307 473 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 NFIL3Q16649 462 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 DDR2Q16832 855 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 CFAP221Q4G0U5 840 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 GPR158Q5T848 1215 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 SPATA2LQ8IUW3 424 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-203ENST00000474056 GPIHBP1Q8IV16 184 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 SMYD4Q8IYR2 804 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-203ENST00000474056 MYLPFQ96A32 169 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 SYAP1Q96A49 352 aaPredicted RBP19.19■□□□□ 0.66
UPF3A-203ENST00000474056 ELMO3Q96BJ8 720 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 CCDC34Q96HJ3 373 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 PHOX2BQ99453 314 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 FRMD4BQ9Y2L6 1034 aa19.19■□□□□ 0.66
UPF3A-203ENST00000474056 HELZP42694 1942 aaKnown RBP19.19■□□□□ 0.66
UPF3A-203ENST00000474056 H0Y858 1186 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 TACC1O75410 805 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 VNN1O95497 513 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 DCNP07585 359 aaKnown RBP19.18■□□□□ 0.66
UPF3A-203ENST00000474056 CSH1P0DML2 217 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 CSH2P0DML3 217 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 ATICP31939 592 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 AP3M2P53677 418 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 FAM160A1Q05DH4 1040 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 ARHGAP15Q53QZ3 475 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 C1orf220Q5T0J3 134 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 TMEM150AQ86TG1 271 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 ARID3BQ8IVW6 561 aaPredicted RBP19.18■□□□□ 0.66
UPF3A-203ENST00000474056 CCDC105Q8IYK2 499 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 OR6B3Q8NGW1 331 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 TMC2Q8TDI7 906 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 DEPDC1BQ8WUY9 529 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 ERCC4Q92889 916 aaPredicted RBP19.18■□□□□ 0.66
UPF3A-203ENST00000474056 FUBP3Q96I24 572 aaKnown RBP eCLIP19.18■□□□□ 0.66
UPF3A-203ENST00000474056 TRMT61BQ9BVS5 477 aaKnown RBP19.18■□□□□ 0.66
UPF3A-203ENST00000474056 BRD9Q9H8M2 597 aa19.18■□□□□ 0.66
UPF3A-203ENST00000474056 VRTNQ9H8Y1 702 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms