RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 F8VZ95 297 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 SNPHO15079 494 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 ANXA9O76027 345 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 P4HBP07237 508 aaKnown RBP13.83□□□□□ -0.2
COL6A3-209ENST00000472056 GCLMP48507 274 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 C21orf59P57076 290 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 CYP4A22Q5TCH4 519 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 KYQ8NBH2 561 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 PIGSQ96S52 555 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 NCKIPSDQ9NZQ3 722 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 GJA3Q9Y6H8 435 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 MYO1GB0I1T2 1018 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 NCAM2O15394 837 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 GYG1P46976 350 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 XIAPP98170 497 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 KCTD1Q719H9 257 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 C11orf70Q9BRQ4 267 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 SERHL2Q9H4I8 314 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 SERHLQ9NQF3 203 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 MAP3K20Q9NYL2 800 aaKnown RBP13.83□□□□□ -0.2
COL6A3-209ENST00000472056 PLA2R1Q13018 1463 aa13.83□□□□□ -0.2
COL6A3-209ENST00000472056 MLNP12872 115 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 S100A1P23297 94 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 AKAP5P24588 427 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 FASP25445 335 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 XRCC4Q13426 336 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 EAPPQ56P03 285 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 CLEC4GQ6UXB4 293 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 DSTYKQ6XUX3 929 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 BSDC1Q9NW68 430 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 VAV3Q9UKW4 847 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 RPS6KA5O75582 802 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 EYA4O95677 639 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 FCHO2Q0JRZ9 810 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 MAD2L1Q13257 205 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 EFHC1Q5JVL4 640 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 LRRC74BQ6ZQY2 392 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 AP3S1Q92572 193 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 EMSYQ7Z589 1322 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 CDHR2Q9BYE9 1310 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 MAGEB16A2A368 324 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 GTF2H1P32780 548 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 SLC29A2Q14542 456 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 ZNF333Q96JL9 665 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 RGS20O76081 388 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 SLC34A1Q06495 639 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 CTTNQ14247 550 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 ZCCHC7Q8N3Z6 543 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 ARMC7Q9H6L4 198 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 H3BNX3 289 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 A1BGP04217 495 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 GRIK1P39086 918 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 UBE3AQ05086 875 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 CNTN1Q12860 1018 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 NAB1Q13506 487 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 LRRC36Q1X8D7 754 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 TBC1D10BQ4KMP7 808 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 MZT2BQ6NZ67 158 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 RORBQ92753 470 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 SLC10A4Q96EP9 437 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 WDR12Q9GZL7 423 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 SQORQ9Y6N5 450 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 KRT34O76011 436 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 SLC2A3P11169 496 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 UCHL3P15374 230 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 SKIV2L2P42285 1042 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 TOP3AQ13472 1001 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 C16orf62Q7Z3J2 963 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 KRT78Q8N1N4 520 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 ZNF398Q8TD17 642 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 EDC3Q96F86 508 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 EXOSC4Q9NPD3 245 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 IGSF1Q8N6C5 1336 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 TRAPPC3O43617 180 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 GAS2O43903 313 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 UBTFL6P0CB48 400 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 TARSP26639 723 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 KRT77Q7Z794 578 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 EID3Q8N140 333 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 PRDM16Q9HAZ2 1276 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 LGR6Q9HBX8 967 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 RGS18Q9NS28 235 aa13.82□□□□□ -0.2
COL6A3-209ENST00000472056 RBM12Q9NTZ6 932 aaKnown RBP13.82□□□□□ -0.2
COL6A3-209ENST00000472056 GDF11O95390 407 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 DPY19L2Q6NUT2 758 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 FUT8Q9BYC5 575 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 TUBE1Q9UJT0 475 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 SAGE2PA6NJ88 616 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 M0QYV0 167 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 DHX35Q9H5Z1 703 aaKnown RBP13.81□□□□□ -0.2
COL6A3-209ENST00000472056 BTG4Q9NY30 223 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 STK39Q9UEW8 545 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 PLAGL2Q9UPG8 496 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 ATP6V1G2O95670 118 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 CDC73Q6P1J9 531 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.81□□□□□ -0.2
COL6A3-209ENST00000472056 FNIP1Q8TF40 1166 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 RNF25Q96BH1 459 aaPredicted RBP13.81□□□□□ -0.2
COL6A3-209ENST00000472056 STRBPQ96SI9 672 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms