RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 ZNF134P52741 427 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 SOX10P56693 466 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 SOX8P57073 446 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 LOXL3P58215 753 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 NKX6-1P78426 367 aaPredicted RBP1.86□□□□□ -2.11
UBXN4-207ENST00000471246 EXOSC10Q01780 885 aaKnown RBP1.86□□□□□ -2.11
UBXN4-207ENST00000471246 FOXF2Q12947 444 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 PIN1Q13526 163 aaPredicted RBP1.86□□□□□ -2.11
UBXN4-207ENST00000471246 ZNF267Q14586 743 aaPredicted RBP1.86□□□□□ -2.11
UBXN4-207ENST00000471246 PLS1Q14651 629 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 FAM153CQ494X1 144 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 CCDC157Q569K6 752 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 TEDDM1Q5T9Z0 273 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 EMC10Q5UCC4 262 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 FAM160B1Q5W0V3 765 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 FCRLBQ6BAA4 426 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 TMEM108Q6UXF1 575 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 USP37Q86T82 979 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 RASAL3Q86YV0 1011 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 GRAMD1CQ8IYS0 662 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 PCSK9Q8NBP7 692 aaKnown RBP1.86□□□□□ -2.11
UBXN4-207ENST00000471246 ATRIPQ8WXE1 791 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 DDX17Q92841 729 aaKnown RBP1.86□□□□□ -2.11
UBXN4-207ENST00000471246 HPS3Q969F9 1004 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 FAM136AQ96C01 138 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 MTFMTQ96DP5 389 aaKnown RBP1.86□□□□□ -2.11
UBXN4-207ENST00000471246 SLC35A4Q96G79 324 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 SLC46A1Q96NT5 459 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 HAPLN3Q96S86 360 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 MAP3K14Q99558 947 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 AMBRA1Q9C0C7 1298 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 TTYH3Q9C0H2 523 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 SLC12A5Q9H2X9 1139 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 TCF7L1Q9HCS4 588 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 SERHLQ9NQF3 203 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 PNPOQ9NVS9 261 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 EHD3Q9NZN3 535 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 DKK3Q9UBP4 350 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 SERGEFQ9UGK8 458 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 IP6K2Q9UHH9 426 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 STXBP5LQ9Y2K9 1186 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 PCDHA1Q9Y5I3 950 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 UTP18Q9Y5J1 556 aaKnown RBP eCLIP1.86□□□□□ -2.11
UBXN4-207ENST00000471246 RAD54BQ9Y620 910 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 WNT6Q9Y6F9 365 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 CACNA1IQ9P0X4 2223 aa1.86□□□□□ -2.11
UBXN4-207ENST00000471246 hCG_2014768A0A024R1R8 64 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 CGB1A6NKQ9 187 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 LINC01548A6NM66 108 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 H3BUI4 141 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 DCLK1O15075 740 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 PPM1DO15297 605 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 OFD1O75665 1012 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ALDH1L1O75891 902 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ALDH2P05091 517 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 GRPP07492 148 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 CT47B1P0C2W7 299 aaPredicted RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ATXN1LP0C7T5 689 aaKnown RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 HDCP19113 662 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 VCAM1P19320 739 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 PPIFP30405 207 aaKnown RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 LILRA4P59901 499 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 RAB1AP62820 205 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 MCL1Q07820 350 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 TTF1Q15361 905 aaPredicted RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 TBCCQ15814 346 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 LONRF3Q496Y0 759 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ATAT1Q5SQI0 421 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 IFIT1BQ5T764 474 aaKnown RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ZNF618Q5T7W0 954 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 PTF1AQ7RTS3 328 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ZNF551Q7Z340 670 aaPredicted RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 MAVSQ7Z434 540 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 SRRM1Q8IYB3 904 aaKnown RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 PLBD2Q8NHP8 589 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 DIS3LQ8TF46 1054 aaKnown RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 HASPINQ8TF76 798 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 STAG1Q8WVM7 1258 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ANKS1AQ92625 1134 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 CDK5RAP3Q96JB5 506 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 CGRRF1Q99675 332 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 RTFDC1Q9BY42 306 aaPredicted RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 RHOBTB2Q9BYZ6 727 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ARMT1Q9H993 441 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 NMRK2Q9NPI5 230 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 TYW1Q9NV66 732 aaKnown RBP1.85□□□□□ -2.11
UBXN4-207ENST00000471246 STAP2Q9UGK3 403 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 SERTAD3Q9UJW9 196 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 PADI4Q9UM07 663 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 PCDHA6Q9UN73 950 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 ANKRD6Q9Y2G4 727 aa1.85□□□□□ -2.11
UBXN4-207ENST00000471246 DNAJC9-AS1A6NH13 148 aa1.84□□□□□ -2.11
UBXN4-207ENST00000471246 H0YIZ8 118 aa1.84□□□□□ -2.11
UBXN4-207ENST00000471246 SLC16A3O15427 465 aaKnown RBP1.84□□□□□ -2.11
UBXN4-207ENST00000471246 AKAP10O43572 662 aa1.84□□□□□ -2.11
UBXN4-207ENST00000471246 TLR5O60602 858 aa1.84□□□□□ -2.11
UBXN4-207ENST00000471246 PRKCGP05129 697 aa1.84□□□□□ -2.11
UBXN4-207ENST00000471246 HNRNPCP07910 306 aaKnown RBP eCLIP1.84□□□□□ -2.11
UBXN4-207ENST00000471246 PDGFRBP09619 1106 aa1.84□□□□□ -2.11
UBXN4-207ENST00000471246 JUPP14923 745 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms