RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 SOCS4Q8WXH5 440 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 SEPT1Q8WYJ6 367 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 TRIB2Q92519 343 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 FAM168AQ92567 244 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 USP6NLQ92738 828 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 GLG1Q92896 1179 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 PAGE5Q96GU1 130 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 CCDC34Q96HJ3 373 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 CCDC43Q96MW1 224 aaKnown RBP4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 SH2D3AQ9BRG2 576 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 POLR3CQ9BUI4 534 aaPredicted RBP4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 CCSER1Q9C0I3 900 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 AP5M1Q9H0R1 490 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 SLC6A17Q9H1V8 727 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 ABHD16BQ9H3Z7 469 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 CLSTN2Q9H4D0 955 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 ZHX3Q9H4I2 956 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 VTA1Q9NP79 307 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 ZNF302Q9NR11 478 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 PDLIM7Q9NR12 457 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 FANCLQ9NW38 375 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 SAGE1Q9NXZ1 904 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 GULP1Q9UBP9 304 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 SRRDQ9UH36 339 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 SFMBT1Q9UHJ3 866 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 HOOK1Q9UJC3 728 aaKnown RBP4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 FAM184BQ9ULE4 1060 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 DNM3Q9UQ16 869 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 HPSEQ9Y251 543 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 PCDHA10Q9Y5I2 948 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 MYH15Q9Y2K3 1946 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 A0A0G2JMZ2 1700 aa4.52□□□□□ -1.69
TMEM39A-204ENST00000468545 NFASCO94856 1347 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 KDM3AQ9Y4C1 1321 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 LOC102724159A0A0B4J2E5 919 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 FAM237AA0A1B0GTK4 181 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 ARHGEF35A5YM69 484 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 TMEM150BA6NC51 233 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 AQP7O14520 342 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 PLD2O14939 933 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 CTAGE5O15320 804 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 EFCAB14O75071 495 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 FARP2O94887 1054 aaPredicted RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 LETM1O95202 739 aaPredicted RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 SMC2O95347 1197 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 MYL3P08590 195 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 HOXC6P09630 235 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 SUPT20HL2P0C7V6 817 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 IDEP14735 1019 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 NAT1P18440 290 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 RPA1P27694 616 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 CCND3P30281 292 aaPredicted RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 SFNP31947 248 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 TCF7P36402 384 aaPredicted RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 QARSP47897 775 aaKnown RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 STAT5BP51692 787 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 GPR85P60893 370 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 PSMC5P62195 406 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 ASIC1P78348 528 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 BEX3Q00994 111 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 AMPD3Q01432 767 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 CACNB2Q08289 660 aaPredicted RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 SPIRE1Q08AE8 756 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 CUL4BQ13620 913 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 KIR3DS1Q14943 382 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 PWP2Q15269 919 aaKnown RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 TCEA2Q15560 299 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 UGCGQ16739 394 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 ZSCAN23Q3MJ62 389 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 HSDL1Q3SXM5 330 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 XKR9Q5GH70 373 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 FAM160B1Q5W0V3 765 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 OLFML2BQ68BL8 750 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 SDE2Q6IQ49 451 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 CCDC62Q6P9F0 684 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 KCNT2Q6UVM3 1135 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 METTL7BQ6UX53 244 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 ABHD15Q6UXT9 468 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 KCNK18Q7Z418 384 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 GPBP1Q86WP2 473 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 IRF2BP1Q8IU81 584 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 CCDC60Q8IWA6 550 aaPredicted RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 MSL3Q8N5Y2 521 aaKnown RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 LZTR1Q8N653 840 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 TRPV1Q8NER1 839 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 LRRC15Q8TF66 581 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 AFG1LQ8WV93 481 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 LARP4BQ92615 738 aaKnown RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 RAD54LQ92698 747 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 DPF3Q92784 378 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 SMARCE1Q969G3 411 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 TIGD1Q96MW7 591 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 GPR20Q99678 358 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 HSD17B14Q9BPX1 270 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 SENP7Q9BQF6 1050 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 PYM1Q9BRP8 204 aaKnown RBP4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 LXNQ9BS40 222 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 KATNBL1Q9H079 304 aa4.51□□□□□ -1.69
TMEM39A-204ENST00000468545 NT5C3AQ9H0P0 336 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms