RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 NCAM2O15394 837 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 TNNI1P19237 187 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 GDI1P31150 447 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 RPL10AP62906 217 aaKnown RBP20.47■□□□□ 0.87
COL7A1-207ENST00000467985 SOWAHAQ2M3V2 549 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 TPRG1Q6ZUI0 275 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 LIMS2Q7Z4I7 341 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 YAF2Q8IY57 180 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 LTB4R2Q9NPC1 389 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 HEBP1Q9NRV9 189 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 ZNF292O60281 2723 aa20.47■□□□□ 0.87
COL7A1-207ENST00000467985 RIF1Q5UIP0 2472 aaKnown RBP20.46■□□□□ 0.87
COL7A1-207ENST00000467985 HEPACAM2A8MVW5 462 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 ZNF263O14978 683 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 KLRC4O43908 158 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 GFRA3O60609 400 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 EXOC3O60645 756 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 GLULP15104 373 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 GPR158Q5T848 1215 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 ARID3BQ8IVW6 561 aaPredicted RBP20.46■□□□□ 0.87
COL7A1-207ENST00000467985 C1orf210Q8IVY1 113 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 GIPC2Q8TF65 315 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 TMEM174Q8WUU8 243 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 CCDC127Q96BQ5 260 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 FUBP3Q96I24 572 aaKnown RBP eCLIP20.46■□□□□ 0.87
COL7A1-207ENST00000467985 IPO9Q96P70 1041 aaKnown RBP20.46■□□□□ 0.87
COL7A1-207ENST00000467985 PI4K2AQ9BTU6 479 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 TASP1Q9H6P5 420 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 TMLHEQ9NVH6 421 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 OBP2AQ9NY56 170 aa20.46■□□□□ 0.87
COL7A1-207ENST00000467985 FAM237AA0A1B0GTK4 181 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 SOBPA7XYQ1 873 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 DPYSL4O14531 572 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 CSH1P0DML2 217 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 CSH2P0DML3 217 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 ACAT1P24752 427 aaKnown RBP20.45■□□□□ 0.86
COL7A1-207ENST00000467985 SYKP43405 635 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 MLLT6P55198 1093 aaPredicted RBP20.45■□□□□ 0.86
COL7A1-207ENST00000467985 FCHO2Q0JRZ9 810 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 STK4Q13043 487 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 MAPRE1Q15691 268 aaKnown RBP20.45■□□□□ 0.86
COL7A1-207ENST00000467985 CFAP221Q4G0U5 840 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 STXBP5Q5T5C0 1151 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 SCARA3Q6AZY7 606 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 CCDC47Q96A33 483 aaKnown RBP20.45■□□□□ 0.86
COL7A1-207ENST00000467985 PKMYT1Q99640 499 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 MKNK1Q9BUB5 465 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 IL21Q9HBE4 155 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 GTF3C4Q9UKN8 822 aa20.45■□□□□ 0.86
COL7A1-207ENST00000467985 NUP210Q8TEM1 1887 aaPredicted RBP20.45■□□□□ 0.86
COL7A1-207ENST00000467985 F5P12259 2224 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 A0A1W2PQ27 194 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 A0A1W2PQ64 194 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 A0A1W2PQD8 194 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 CHADO15335 359 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 KIF20AO95235 890 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 FAM163BP0C2L3 166 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 CD72P21854 359 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 WARSP23381 471 aaKnown RBP20.44■□□□□ 0.86
COL7A1-207ENST00000467985 DDX6P26196 483 aaKnown RBP eCLIP20.44■□□□□ 0.86
COL7A1-207ENST00000467985 RPS9P46781 194 aaKnown RBP20.44■□□□□ 0.86
COL7A1-207ENST00000467985 CDR1P51861 262 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 AP3M2P53677 418 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 KMT5BQ4FZB7 885 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 C1orf228Q6PIY5 440 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 C4orf50Q6ZRC1 276 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 FRMD5Q7Z6J6 570 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 OSTM1Q86WC4 334 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 SPATA2LQ8IUW3 424 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-207ENST00000467985 SLC9A9Q8IVB4 645 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 CLDN23Q96B33 292 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 MSANTD3Q96H12 275 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 MMS19Q96T76 1030 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 UXTQ9UBK9 157 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-207ENST00000467985 CDH9Q9ULB4 789 aa20.44■□□□□ 0.86
COL7A1-207ENST00000467985 MTF2Q9Y483 593 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-207ENST00000467985 STAU1O95793 577 aaKnown RBP20.43■□□□□ 0.86
COL7A1-207ENST00000467985 HMGA1P17096 107 aaKnown RBP20.43■□□□□ 0.86
COL7A1-207ENST00000467985 CYP2F1P24903 491 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 MAGEA11P43364 429 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 NDUFA8P51970 172 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 TRPC3Q13507 836 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 ARHGAP29Q52LW3 1261 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 FAM171BQ6P995 826 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 KIAA0895Q8NCT3 520 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 CSGALNACT1Q8TDX6 532 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 KBTBD7Q8WVZ9 684 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 NKD2Q969F2 451 aaPredicted RBP20.43■□□□□ 0.86
COL7A1-207ENST00000467985 SEMA4AQ9H3S1 761 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 PIAS3Q9Y6X2 628 aa20.43■□□□□ 0.86
COL7A1-207ENST00000467985 ARNTLO00327 626 aa20.42■□□□□ 0.86
COL7A1-207ENST00000467985 PDXKO00764 312 aa20.42■□□□□ 0.86
COL7A1-207ENST00000467985 LRRN2O75325 713 aa20.42■□□□□ 0.86
COL7A1-207ENST00000467985 TACC1O75410 805 aa20.42■□□□□ 0.86
COL7A1-207ENST00000467985 RPN1P04843 607 aaKnown RBP20.42■□□□□ 0.86
COL7A1-207ENST00000467985 TARSP26639 723 aaKnown RBP20.42■□□□□ 0.86
COL7A1-207ENST00000467985 ATICP31939 592 aa20.42■□□□□ 0.86
COL7A1-207ENST00000467985 NLRP12P59046 1061 aa20.42■□□□□ 0.86
COL7A1-207ENST00000467985 TNNC1P63316 161 aa20.42■□□□□ 0.86
COL7A1-207ENST00000467985 CYP4F8P98187 520 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms