RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TTI2Q6NXR4 508 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 ZC3H14Q6PJT7 736 aaKnown RBP19.02■□□□□ 0.64
COL7A1-205ENST00000465238 RBM43Q6ZSC3 357 aaKnown RBP19.02■□□□□ 0.64
COL7A1-205ENST00000465238 TRAPPC11Q7Z392 1133 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 LEMD2Q8NC56 503 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 PLEKHO2Q8TD55 490 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 ZNF512Q96ME7 567 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-205ENST00000465238 ZNF560Q96MR9 790 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 BCO2Q9BYV7 579 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 RWDD2AQ9UIY3 292 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 SLC16A3O15427 465 aaKnown RBP19.01■□□□□ 0.63
COL7A1-205ENST00000465238 PHACTR2O75167 634 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 LRRN2O75325 713 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 BFSP1Q12934 665 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 UBXN2BQ14CS0 331 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 SV2CQ496J9 727 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 TANGO2Q6ICL3 276 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 CAVIN1Q6NZI2 390 aaKnown RBP19.01■□□□□ 0.63
COL7A1-205ENST00000465238 POTEHQ6S545 545 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 RNF19BQ6ZMZ0 732 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 ZC3H3Q8IXZ2 948 aaKnown RBP19.01■□□□□ 0.63
COL7A1-205ENST00000465238 ZNF516Q92618 1163 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 TCEAL4Q96EI5 215 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 CEP63Q96MT8 703 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 NELL2Q99435 816 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 DUSP9Q99956 384 aaKnown RBP19.01■□□□□ 0.63
COL7A1-205ENST00000465238 PLA2G2FQ9BZM2 168 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 GZF1Q9H116 711 aaPredicted RBP19.01■□□□□ 0.63
COL7A1-205ENST00000465238 TMEM63CQ9P1W3 806 aa19.01■□□□□ 0.63
COL7A1-205ENST00000465238 FRYLO94915 3013 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 IKBKBO14920 756 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 FGFR1OPO95684 399 aaKnown RBP19■□□□□ 0.63
COL7A1-205ENST00000465238 LMNAP02545 664 aaKnown RBP19■□□□□ 0.63
COL7A1-205ENST00000465238 SP9P0CG40 484 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 CCR2P41597 374 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 MAGEA9P43362 315 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 DLG4P78352 724 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 CLDN10P78369 228 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 ENPEPQ07075 957 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 TWF1Q12792 350 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 MYO1EQ12965 1108 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 BIRC3Q13489 604 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 TRPC3Q13507 836 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 KLHL40Q2TBA0 621 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 DPCR1Q3MIW9 517 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 FILIP1Q7Z7B0 1213 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 LRRC52Q8N7C0 313 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 DNASE1L2Q92874 299 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 SENP8Q96LD8 212 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 ZFP14Q9HCL3 533 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 LTB4R2Q9NPC1 389 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 ASAH2Q9NR71 780 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 CEP72Q9P209 647 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 SIX4Q9UIU6 781 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 TIMM13Q9Y5L4 95 aaPredicted RBP19■□□□□ 0.63
COL7A1-205ENST00000465238 R4GN57 208 aa19■□□□□ 0.63
COL7A1-205ENST00000465238 COL4A3Q01955 1670 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 F5P12259 2224 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 OR6C75A6NL08 312 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 FAM170BA6NMN3 283 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 KPNA7A9QM74 516 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 SPTLC1O15269 473 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 ODC1P11926 461 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 FCARP24071 287 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 EPHA5P54756 1037 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 PLD1Q13393 1074 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 TPD52L1Q16890 204 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-205ENST00000465238 SKOR2Q2VWA4 1001 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-205ENST00000465238 CCDC40Q4G0X9 1142 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 FAM78AQ5JUQ0 283 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 TPRG1Q6ZUI0 275 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 CXorf38Q8TB03 319 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 HPDLQ96IR7 371 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 ASB16Q96NS5 453 aa18.99■□□□□ 0.63
COL7A1-205ENST00000465238 SRRTQ9BXP5 876 aaKnown RBP18.99■□□□□ 0.63
COL7A1-205ENST00000465238 METTL14Q9HCE5 456 aaKnown RBP18.99■□□□□ 0.63
COL7A1-205ENST00000465238 ARMCX3Q9UH62 379 aaPredicted RBP18.99■□□□□ 0.63
COL7A1-205ENST00000465238 PATJQ8NI35 1801 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 CYB561D2O14569 222 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 NCAM2O15394 837 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 STX10O60499 249 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 TRIM49P0CI25 452 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 TRIM49CP0CI26 452 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 MYL4P12829 197 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 TYMPP19971 482 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 CD72P21854 359 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 ERCC5P28715 1186 aaPredicted RBP18.98■□□□□ 0.63
COL7A1-205ENST00000465238 GPR17Q13304 367 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 CT47A1Q5JQC4 288 aaPredicted RBP18.98■□□□□ 0.63
COL7A1-205ENST00000465238 ZNF852Q6ZMS4 543 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 HS6ST3Q8IZP7 471 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 SMARCD2Q92925 531 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 BORCS6Q96GS4 357 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 TRMT61BQ9BVS5 477 aaKnown RBP18.98■□□□□ 0.63
COL7A1-205ENST00000465238 BRD9Q9H8M2 597 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 ANO10Q9NW15 660 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 SPATA6Q9NWH7 488 aaPredicted RBP18.98■□□□□ 0.63
COL7A1-205ENST00000465238 FBXO4Q9UKT5 387 aa18.98■□□□□ 0.63
COL7A1-205ENST00000465238 MRPS17Q9Y2R5 130 aaKnown RBP18.98■□□□□ 0.63
COL7A1-205ENST00000465238 MTF2Q9Y483 593 aaPredicted RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms