RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 TDP1Q9NUW8 608 aa24.37■■□□□ 1.49
USP4-208ENST00000464168 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.37■■□□□ 1.49
USP4-208ENST00000464168 DDX6P26196 483 aaKnown RBP eCLIP24.36■■□□□ 1.49
USP4-208ENST00000464168 PNPLA4P41247 253 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 GPR15P49685 360 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 TRIM68Q6AZZ1 485 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 FSTL4Q6MZW2 842 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 PDCL2Q8N4E4 241 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 STKLD1Q8NE28 680 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 RIN3Q8TB24 985 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 ZNF560Q96MR9 790 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 FAM213AQ9BRX8 229 aa24.36■■□□□ 1.49
USP4-208ENST00000464168 MYMKA6NI61 221 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 TRDMT1O14717 391 aaKnown RBP24.35■■□□□ 1.49
USP4-208ENST00000464168 PRPF40AO75400 957 aaKnown RBP24.35■■□□□ 1.49
USP4-208ENST00000464168 POLR2BP30876 1174 aaKnown RBP24.35■■□□□ 1.49
USP4-208ENST00000464168 TFAMQ00059 246 aaKnown RBP24.35■■□□□ 1.49
USP4-208ENST00000464168 TSPY1Q01534 308 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 GRSF1Q12849 480 aaKnown RBP eCLIP24.35■■□□□ 1.49
USP4-208ENST00000464168 NFE2Q16621 373 aaPredicted RBP24.35■■□□□ 1.49
USP4-208ENST00000464168 SDHAF4Q5VUM1 108 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 SCARA3Q6AZY7 606 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 MON1AQ86VX9 555 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 DNAJC19Q96DA6 116 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 MRPL44Q9H9J2 332 aaKnown RBP24.35■■□□□ 1.49
USP4-208ENST00000464168 SEL1LQ9UBV2 794 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 STK17AQ9UEE5 414 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 L1RE1Q9UN81 338 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 AGAP1Q9UPQ3 857 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 CLIC4Q9Y696 253 aa24.35■■□□□ 1.49
USP4-208ENST00000464168 SOBPA7XYQ1 873 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 ADRB1P08588 477 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 CSH1P0DML2 217 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 CSH2P0DML3 217 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 ARSAP15289 507 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 PXNP49023 591 aaPredicted RBP24.34■■□□□ 1.49
USP4-208ENST00000464168 BFSP1Q12934 665 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 L1TD1Q5T7N2 865 aaKnown RBP24.34■■□□□ 1.49
USP4-208ENST00000464168 C1orf127Q8N9H9 656 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 CXorf38Q8TB03 319 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 LEO1Q8WVC0 666 aaPredicted RBP24.34■■□□□ 1.49
USP4-208ENST00000464168 ACCSQ96QU6 501 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 ACBD6Q9BR61 282 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 FBRSL1Q9HCM7 1045 aaKnown RBP24.34■■□□□ 1.49
USP4-208ENST00000464168 TBC1D7Q9P0N9 293 aa24.34■■□□□ 1.49
USP4-208ENST00000464168 FBXO2Q9UK22 296 aaPredicted RBP24.34■■□□□ 1.49
USP4-208ENST00000464168 MAGED2Q9UNF1 606 aaPredicted RBP24.34■■□□□ 1.49
USP4-208ENST00000464168 MAP1BP46821 2468 aaKnown RBP24.33■■□□□ 1.49
USP4-208ENST00000464168 KIF26AQ9ULI4 1882 aaPredicted RBP24.33■■□□□ 1.49
USP4-208ENST00000464168 FOXD2O60548 495 aaPredicted RBP24.33■■□□□ 1.49
USP4-208ENST00000464168 ITGB3P05106 788 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 GAP43P17677 238 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 CYP2F1P24903 491 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 DDR2Q16832 855 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 PPM1JQ5JR12 505 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 BRSK2Q8IWQ3 736 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 GAB3Q8WWW8 586 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 MRPS31Q92665 395 aaKnown RBP24.33■■□□□ 1.49
USP4-208ENST00000464168 SAAL1Q96ER3 474 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 FAM84AQ96KN4 292 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 PKMYT1Q99640 499 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 KIF9Q9HAQ2 790 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 DDX43Q9NXZ2 648 aaKnown RBP24.33■■□□□ 1.49
USP4-208ENST00000464168 CCDC39Q9UFE4 941 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 EXOC7Q9UPT5 735 aa24.33■■□□□ 1.49
USP4-208ENST00000464168 CCDC163A0A0D9SF12 145 aa24.32■■□□□ 1.48
USP4-208ENST00000464168 TULP1O00294 542 aaPredicted RBP24.32■■□□□ 1.48
USP4-208ENST00000464168 ATG13O75143 517 aa24.32■■□□□ 1.48
USP4-208ENST00000464168 ACAT1P24752 427 aaKnown RBP24.32■■□□□ 1.48
USP4-208ENST00000464168 ZNF268Q14587 947 aaPredicted RBP24.32■■□□□ 1.48
USP4-208ENST00000464168 RRAGBQ5VZM2 374 aa24.32■■□□□ 1.48
USP4-208ENST00000464168 CC2D1AQ6P1N0 951 aaPredicted RBP24.32■■□□□ 1.48
USP4-208ENST00000464168 CACTINQ8WUQ7 758 aaKnown RBP24.32■■□□□ 1.48
USP4-208ENST00000464168 ABCB6Q9NP58 842 aa24.32■■□□□ 1.48
USP4-208ENST00000464168 POLR3BQ9NW08 1133 aaPredicted RBP24.32■■□□□ 1.48
USP4-208ENST00000464168 SRPRBQ9Y5M8 271 aaKnown RBP24.32■■□□□ 1.48
USP4-208ENST00000464168 AXIN1O15169 862 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 HUS1O60921 280 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 TADA3O75528 432 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 NOL4O94818 638 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 EGFP01133 1207 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 GALK1P51570 392 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 CASP5P51878 434 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 RPL10AP62906 217 aaKnown RBP24.31■■□□□ 1.48
USP4-208ENST00000464168 INTS6LQ5JSJ4 861 aaKnown RBP24.31■■□□□ 1.48
USP4-208ENST00000464168 NAIF1Q69YI7 327 aaPredicted RBP24.31■■□□□ 1.48
USP4-208ENST00000464168 RALGAPA1Q6GYQ0 2036 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 SV2BQ7L1I2 683 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 CACNA2D4Q7Z3S7 1137 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 TMEM86AQ8N2M4 240 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 CSGALNACT2Q8N6G5 542 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 LRRC52Q8N7C0 313 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 LOXL4Q96JB6 756 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 MYRFLQ96LU7 910 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 CLIC6Q96NY7 704 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 GDAP2Q9NXN4 497 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 RBAKQ9NYW8 714 aaPredicted RBP24.31■■□□□ 1.48
USP4-208ENST00000464168 GTF3C4Q9UKN8 822 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 SLC8A2Q9UPR5 921 aa24.31■■□□□ 1.48
USP4-208ENST00000464168 TCHHQ07283 1943 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms