RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 CENPCQ03188 943 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 NPNTQ6UXI9 565 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 MON1BQ7L1V2 547 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 CCDC91Q7Z6B0 441 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 DDX27Q96GQ7 796 aaKnown RBP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 ACAP3Q96P50 834 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 OSMRQ99650 979 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 IQCGQ9H095 443 aaKnown RBP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 HAUS2Q9NVX0 235 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 RBPJLQ9UBG7 517 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 NENFQ9UMX5 172 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 CHMP2BQ9UQN3 213 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 NFS1Q9Y697 457 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 CCL15-CCL14A0A0B4J2E2 113 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 FSCN2O14926 492 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 MCF2LO15068 1137 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 GRIN3BO60391 1043 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 MAN1A1P33908 653 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 EIF3EP60228 445 aaKnown RBP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 POU5F1Q01860 360 aaKnown RBP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 AUHQ13825 339 aaKnown RBP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 CCL15Q16663 113 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 SPOCD1Q6ZMY3 1216 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 VSIG1Q86XK7 387 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 SCUBE3Q8IX30 993 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 PIH1D1Q9NWS0 290 aaKnown RBP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 H3BRB1 525 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 RBP3P10745 1247 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 SSTR1P30872 391 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 NUMBP49757 651 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 PTPN20Q4JDL3 420 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 SH3PXD2AQ5TCZ1 1133 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 CD302Q8IX05 232 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 RCOR2Q8IZ40 523 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 OLIG1Q8TAK6 271 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 SPATA18Q8TC71 538 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 TGS1Q96RS0 853 aaKnown RBP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 TUT1Q9H6E5 874 aaKnown RBP12.6□□□□□ -0.39
SMPD4-213ENST00000454468 NINJ2Q9NZG7 142 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 CENPFP49454 3210 aa12.6□□□□□ -0.39
SMPD4-213ENST00000454468 A8MXQ7 604 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 ACKR2O00590 384 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 MSCO60682 206 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 SHOX2O60902 331 aaPredicted RBP12.59□□□□□ -0.39
SMPD4-213ENST00000454468 TTC4O95801 387 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 EPHX2P34913 555 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 NDST1P52848 882 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 CCNA1P78396 465 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 SMC6Q96SB8 1091 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 TACO1Q9BSH4 297 aaKnown RBP12.59□□□□□ -0.39
SMPD4-213ENST00000454468 ZNF112Q9UJU3 913 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 NAALADL1Q9UQQ1 740 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 TRAPPC3O43617 180 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 AGTP01019 485 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 ACO1P21399 889 aaKnown RBP12.59□□□□□ -0.39
SMPD4-213ENST00000454468 OGDHQ02218 1023 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 ZBTB16Q05516 673 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 CENPUQ71F23 418 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 ANKS1BQ7Z6G8 1248 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 KIF2BQ8N4N8 673 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 OR6J1Q8NGC5 347 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 CPXM1Q96SM3 734 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 SPON1Q9HCB6 807 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 SNTG2Q9NY99 539 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.59□□□□□ -0.39
SMPD4-213ENST00000454468 NRXN2Q9P2S2 1712 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 TGFB3P10600 412 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 ABCD1P33897 745 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 ERFP50548 548 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 PTPN11Q06124 597 aaPredicted RBP12.59□□□□□ -0.39
SMPD4-213ENST00000454468 DNAJC3Q13217 504 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 SURF1Q15526 300 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 ZNF449Q6P9G9 518 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 EXOC3L1Q86VI1 746 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 NME8Q8N427 588 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 GPRC5AQ8NFJ5 357 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 CFAP57Q96MR6 1250 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 TWNKQ96RR1 684 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 C12orf65Q9H3J6 166 aaKnown RBP12.59□□□□□ -0.39
SMPD4-213ENST00000454468 DHX35Q9H5Z1 703 aaKnown RBP12.59□□□□□ -0.39
SMPD4-213ENST00000454468 LRRC19Q9H756 370 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 DCTN4Q9UJW0 460 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 PIN4Q9Y237 131 aaKnown RBP12.59□□□□□ -0.39
SMPD4-213ENST00000454468 SIPA1L1O43166 1804 aa12.59□□□□□ -0.39
SMPD4-213ENST00000454468 SLC25A27O95847 323 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 LGALS2P05162 132 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 MMP8P22894 467 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 CTCFP49711 727 aaPredicted RBP12.58□□□□□ -0.4
SMPD4-213ENST00000454468 LMNB2Q03252 620 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 ZPBP2Q6X784 338 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 TRMT10CQ7L0Y3 403 aaKnown RBP12.58□□□□□ -0.4
SMPD4-213ENST00000454468 FASTKD5Q7L8L6 764 aaKnown RBP12.58□□□□□ -0.4
SMPD4-213ENST00000454468 CCNYQ8ND76 341 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 P3H4Q92791 437 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 ART4Q93070 314 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 FAF2Q96CS3 445 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 C12orf42Q96LP6 360 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 MED10Q9BTT4 135 aa12.58□□□□□ -0.4
SMPD4-213ENST00000454468 AVENQ9NQS1 362 aaPredicted RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms