RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 HPDLQ96IR7 371 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 SLC46A2Q9BY10 475 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 BCO2Q9BYV7 579 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 GZF1Q9H116 711 aaPredicted RBP22.29■■□□□ 1.16
SDC1-205ENST00000447124 TASP1Q9H6P5 420 aa22.29■■□□□ 1.16
SDC1-205ENST00000447124 A0A1B0GVL5 298 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 MYBPHLA2RUH7 354 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 PRPF40AO75400 957 aaKnown RBP22.28■■□□□ 1.16
SDC1-205ENST00000447124 FGF19O95750 216 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 TNNC2P02585 160 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 F11P03951 625 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 CYP2F1P24903 491 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 CYP2J2P51589 502 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 VEPH1Q14D04 833 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 SNRNP35Q16560 246 aaKnown RBP22.28■■□□□ 1.16
SDC1-205ENST00000447124 NFE2Q16621 373 aaPredicted RBP22.28■■□□□ 1.16
SDC1-205ENST00000447124 LEO1Q8WVC0 666 aaPredicted RBP22.28■■□□□ 1.16
SDC1-205ENST00000447124 KBTBD7Q8WVZ9 684 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 ZNF516Q92618 1163 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 R4GN57 208 aa22.28■■□□□ 1.16
SDC1-205ENST00000447124 EP300Q09472 2414 aaPredicted RBP22.27■■□□□ 1.16
SDC1-205ENST00000447124 ATP2C2O75185 946 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 PRAMEF12O95522 483 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 CMA1P23946 247 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 LMO2P25791 158 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 WEE1P30291 646 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 LHX1P48742 406 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 SNRPFP62306 86 aaKnown RBP22.27■■□□□ 1.16
SDC1-205ENST00000447124 MYL7Q01449 175 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 CYP24A1Q07973 514 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 FCHO2Q0JRZ9 810 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 STK4Q13043 487 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 PSMD6Q15008 389 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 DDR2Q16832 855 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 FAM171BQ6P995 826 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 DPH6Q7L8W6 267 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 WDR49Q8IV35 697 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 ADGRF2Q8IZF7 708 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 XXYLT1Q8NBI6 393 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 SPATA18Q8TC71 538 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 SPATA6Q9NWH7 488 aaPredicted RBP22.27■■□□□ 1.16
SDC1-205ENST00000447124 UBE4BO95155 1302 aa22.27■■□□□ 1.16
SDC1-205ENST00000447124 MAN2B1O00754 1011 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 CHADO15335 359 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 DLATP10515 647 aaKnown RBP22.26■■□□□ 1.15
SDC1-205ENST00000447124 PFKFB1P16118 471 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 CDC25CP30307 473 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 MYO1EQ12965 1108 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 TAF12Q16514 161 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 KNOP1Q1ED39 458 aaKnown RBP22.26■■□□□ 1.15
SDC1-205ENST00000447124 ARHGAP15Q53QZ3 475 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 C12orf56Q8IXR9 622 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 CEP57L1Q8IYX8 460 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 PLEKHO2Q8TD55 490 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 FAM3CQ92520 227 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 CCDC127Q96BQ5 260 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 SMG9Q9H0W8 520 aaKnown RBP22.26■■□□□ 1.15
SDC1-205ENST00000447124 NDRG2Q9UN36 371 aaKnown RBP22.26■■□□□ 1.15
SDC1-205ENST00000447124 HPSEQ9Y251 543 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 MRPS17Q9Y2R5 130 aaKnown RBP22.26■■□□□ 1.15
SDC1-205ENST00000447124 NME7Q9Y5B8 376 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 PIAS3Q9Y6X2 628 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 CFAP54Q96N23 3096 aa22.26■■□□□ 1.15
SDC1-205ENST00000447124 MIA3Q5JRA6 1907 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 TNNI1P19237 187 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 RPS9P46781 194 aaKnown RBP22.25■■□□□ 1.15
SDC1-205ENST00000447124 NLRP12P59046 1061 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 KMT5BQ4FZB7 885 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 HS2ST1Q7LGA3 356 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 YAF2Q8IY57 180 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 KIAA0895Q8NCT3 520 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 ZFYVE19Q96K21 471 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 CGRRF1Q99675 332 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 ABCB6Q9NP58 842 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 OBP2AQ9NY56 170 aa22.25■■□□□ 1.15
SDC1-205ENST00000447124 WDR87Q6ZQQ6 2873 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 NCAM2O15394 837 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 PDGFRBP09619 1106 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 CCNE1P24864 410 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 MAGEA9P43362 315 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 SOX9P48436 509 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 SPATA32Q96LK8 384 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 FNBP1Q96RU3 617 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 LMAN1LQ9HAT1 526 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 CRTAC1Q9NQ79 661 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 DMAC2Q9NW81 257 aa22.24■■□□□ 1.15
SDC1-205ENST00000447124 MAGED2Q9UNF1 606 aaPredicted RBP22.24■■□□□ 1.15
SDC1-205ENST00000447124 R3HCC1Q9Y3T6 440 aaKnown RBP22.24■■□□□ 1.15
SDC1-205ENST00000447124 COL4A2P08572 1712 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 GPR179Q6PRD1 2367 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 SLC38A8A6NNN8 435 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 DPYSL4O14531 572 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 LAMTOR5O43504 91 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 CSH1P0DML2 217 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 CSH2P0DML3 217 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 WARSP23381 471 aaKnown RBP22.23■■□□□ 1.15
SDC1-205ENST00000447124 PCSK1P29120 753 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 CASP4P49662 377 aa22.23■■□□□ 1.15
SDC1-205ENST00000447124 MLLT6P55198 1093 aaPredicted RBP22.23■■□□□ 1.15
SDC1-205ENST00000447124 TXNDC8Q6A555 127 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms