RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PGM1P36871 562 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 SIX1Q15475 284 aaPredicted RBP12.46□□□□□ -0.41
MSH6-204ENST00000445503 LRRC36Q1X8D7 754 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 ZNF568Q3ZCX4 644 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 WLSQ5T9L3 541 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 C12orf56Q8IXR9 622 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 KATNAL2Q8IYT4 538 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 UBA3Q8TBC4 463 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 CISHQ9NSE2 258 aa12.46□□□□□ -0.41
MSH6-204ENST00000445503 DDX56Q9NY93 547 aaKnown RBP12.46□□□□□ -0.41
MSH6-204ENST00000445503 KIAA1551Q9HCM1 1747 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 E2F8A0AVK6 867 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 NDC80O14777 642 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 ZBTB48P10074 688 aaPredicted RBP12.46□□□□□ -0.42
MSH6-204ENST00000445503 SKIP12755 728 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 RGS7P49802 495 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 PIGHQ14442 188 aaPredicted RBP12.46□□□□□ -0.42
MSH6-204ENST00000445503 ZNF268Q14587 947 aaPredicted RBP12.46□□□□□ -0.42
MSH6-204ENST00000445503 MAPK6Q16659 721 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 BZW1Q7L1Q6 419 aaKnown RBP12.46□□□□□ -0.42
MSH6-204ENST00000445503 PPIL6Q8IXY8 311 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 ARMC2Q8NEN0 867 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 GBP5Q96PP8 586 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 SLITRK1Q96PX8 696 aa12.46□□□□□ -0.42
MSH6-204ENST00000445503 C2orf71A6NGG8 1288 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 YDJCA8MPS7 323 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 DHX15O43143 795 aaKnown RBP12.45□□□□□ -0.42
MSH6-204ENST00000445503 ZNF862O60290 1169 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 CSDE1O75534 798 aaKnown RBP12.45□□□□□ -0.42
MSH6-204ENST00000445503 MTA2O94776 668 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 ALDH18A1P54886 795 aaKnown RBP12.45□□□□□ -0.42
MSH6-204ENST00000445503 YWHAEP62258 255 aaKnown RBP12.45□□□□□ -0.42
MSH6-204ENST00000445503 MORF4L2Q15014 288 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 TMEM154Q6P9G4 183 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 TTC13Q8NBP0 860 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 ZNF516Q92618 1163 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 ACAP3Q96P50 834 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 DLGAP2Q9P1A6 1054 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 KCNN4O15554 427 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 PYGBP11216 843 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 EPHB1P54762 984 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 CDH8P55286 799 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 ROR1Q01973 937 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 STXBP2Q15833 593 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 ZACNQ401N2 412 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 C12orf50Q8NA57 414 aaPredicted RBP12.45□□□□□ -0.42
MSH6-204ENST00000445503 LPAR1Q92633 364 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 MFSD14AQ96MC6 490 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 TSC22D3Q99576 134 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 FOXP3Q9BZS1 431 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 STK32BQ9NY57 414 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 RIPK3Q9Y572 518 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 SCN7AQ01118 1682 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 B2RBV5 119 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 MAP3K7O43318 606 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 CCDC22O60826 627 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 ZC3H11AO75152 810 aaKnown RBP eCLIP12.45□□□□□ -0.42
MSH6-204ENST00000445503 KRT37O76014 449 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 FDX1P10109 184 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 SAT1P21673 171 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 YARSP54577 528 aaKnown RBP12.45□□□□□ -0.42
MSH6-204ENST00000445503 ZNF200P98182 395 aaPredicted RBP12.45□□□□□ -0.42
MSH6-204ENST00000445503 RASIP1Q5U651 963 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 RNF43Q68DV7 783 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 TXNRD3NBQ6F5E7 133 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 CIAPIN1Q6FI81 312 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 OTOAQ7RTW8 1153 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 MRIQ9BWK5 157 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 SHCBP1LQ9BZQ2 653 aa12.45□□□□□ -0.42
MSH6-204ENST00000445503 TRIM49D1C9J1S8 452 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 H3BRJ5 948 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 NVLO15381 856 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 UNGP13051 313 aaPredicted RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 SERPINB3P29508 390 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 HSD17B4P51659 736 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 NRLP54845 237 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 PDE1BQ01064 536 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 SAMD7Q7Z3H4 446 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 NUDCD3Q8IVD9 361 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 ARID3BQ8IVW6 561 aaPredicted RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 AS3MTQ9HBK9 375 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 GPATCH2LQ9NWQ4 482 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 SLC17A7Q9P2U7 560 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 SCOCQ9UIL1 159 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 ATP8B3O60423 1300 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 MYPNQ86TC9 1320 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 ADGRA3Q8IWK6 1321 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 CAPN9O14815 690 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 ZWINTO95229 277 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 MYL2P10916 166 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 RFC1P35251 1148 aaPredicted RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 GAD2Q05329 585 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 THOC5Q13769 683 aaKnown RBP12.44□□□□□ -0.42
MSH6-204ENST00000445503 BMPR2Q13873 1038 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 PSMD6Q15008 389 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 MAP7D3Q8IWC1 876 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 ASAP3Q8TDY4 903 aa12.44□□□□□ -0.42
MSH6-204ENST00000445503 CCDC124Q96CT7 223 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms