RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GPR17Q13304 367 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 ORC1Q13415 861 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 FAM171BQ6P995 826 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 B3GALNT2Q8NCR0 500 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 TMEM209Q96SK2 561 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 DPEP3Q9H4B8 488 aa16.8■□□□□ 0.28
USP40-206ENST00000443711 LAMA2P24043 3122 aaKnown RBP16.79■□□□□ 0.28
USP40-206ENST00000443711 ATG2AQ2TAZ0 1938 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 CYP26A1O43174 497 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 GFPT2O94808 682 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 CCDC172P0C7W6 258 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 PNMA6AP0CW24 399 aaPredicted RBP16.79■□□□□ 0.28
USP40-206ENST00000443711 VDRP11473 427 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 FERP16591 822 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 KLRC2P26717 231 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 CLCN1P35523 988 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 KRT9P35527 623 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 FXR1P51114 621 aaKnown RBP eCLIP16.79■□□□□ 0.28
USP40-206ENST00000443711 PSMC1P62191 440 aaKnown RBP16.79■□□□□ 0.28
USP40-206ENST00000443711 PTK2Q05397 1052 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 RAB33AQ14088 237 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 GRIN2CQ14957 1233 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 NFE2Q16621 373 aaPredicted RBP16.79■□□□□ 0.28
USP40-206ENST00000443711 SLC39A12Q504Y0 691 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 MDH1BQ5I0G3 518 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 SFMBT2Q5VUG0 894 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 LRRTM3Q86VH5 581 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 GLYCTKQ8IVS8 523 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 MYCBPAPQ8TBZ2 947 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 PKMYT1Q99640 499 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 CRTAC1Q9NQ79 661 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 GTF3C4Q9UKN8 822 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 PCDHGC5Q9Y5F6 944 aa16.79■□□□□ 0.28
USP40-206ENST00000443711 MYBPHLA2RUH7 354 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 LRRC53A6NM62 1247 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 ADAM12O43184 909 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 OR4Q2P0C623 313 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 CD19P15391 556 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 ROR1Q01973 937 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 SGO2Q562F6 1265 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 TPGS2Q68CL5 300 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 C4orf50Q6ZRC1 276 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 ZNF461Q8TAF7 563 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 C2orf15Q8WU43 125 aaKnown RBP16.78■□□□□ 0.28
USP40-206ENST00000443711 SYN2Q92777 582 aaPredicted RBP16.78■□□□□ 0.28
USP40-206ENST00000443711 PPP2R3CQ969Q6 453 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 LPIN3Q9BQK8 851 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 AIPL1Q9NZN9 384 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 IMPACTQ9P2X3 320 aa16.78■□□□□ 0.28
USP40-206ENST00000443711 ATP8B3O60423 1300 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 MYH10P35580 1976 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 GOLGA6L6A8MZA4 724 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 AKR1B15C9JRZ8 316 aaPredicted RBP16.77■□□□□ 0.28
USP40-206ENST00000443711 ABLIM3O94929 683 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 C1RP00736 705 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 GNA15P30679 374 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 STILQ15468 1287 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 ASIC2Q16515 512 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 TSR1Q2NL82 804 aaKnown RBP16.77■□□□□ 0.28
USP40-206ENST00000443711 RNF19BQ6ZMZ0 732 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 PALB2Q86YC2 1186 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 SPATA2LQ8IUW3 424 aaPredicted RBP16.77■□□□□ 0.28
USP40-206ENST00000443711 CNGA4Q8IV77 575 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 C12orf29Q8N999 325 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 OR8K1Q8NGG5 319 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 CYFIP2Q96F07 1278 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 MED10Q9BTT4 135 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 TLE6Q9H808 572 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 FAM49BQ9NUQ9 324 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 TMLHEQ9NVH6 421 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 AFF4Q9UHB7 1163 aaKnown RBP16.77■□□□□ 0.28
USP40-206ENST00000443711 MAFFQ9ULX9 164 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 PCDHB5Q9Y5E4 795 aa16.77■□□□□ 0.28
USP40-206ENST00000443711 MTCL1Q9Y4B5 1905 aaKnown RBP16.76■□□□□ 0.27
USP40-206ENST00000443711 WDR27A2RRH5 827 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 THAP12O43422 761 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 MED7O43513 233 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 MFAP3LO75121 409 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 CLASP2O75122 1294 aaKnown RBP16.76■□□□□ 0.27
USP40-206ENST00000443711 POU3F3P20264 500 aaPredicted RBP16.76■□□□□ 0.27
USP40-206ENST00000443711 CYP27A1Q02318 531 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 ARID5AQ03989 594 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 CNGA2Q16280 664 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 ARHGAP17Q68EM7 881 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 IRF2BP2Q7Z5L9 587 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 SLC47A2Q86VL8 602 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 SPC24Q8NBT2 197 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 SPPL2BQ8TCT7 592 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 TFAP2BQ92481 460 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 MYLPFQ96A32 169 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 PCED1BQ96HM7 432 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 FUBP3Q96I24 572 aaKnown RBP eCLIP16.76■□□□□ 0.27
USP40-206ENST00000443711 FAM161BQ96MY7 647 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 GAS2L1Q99501 681 aaPredicted RBP16.76■□□□□ 0.27
USP40-206ENST00000443711 CDCA3Q99618 268 aaPredicted RBP16.76■□□□□ 0.27
USP40-206ENST00000443711 HNRNPABQ99729 332 aaKnown RBP16.76■□□□□ 0.27
USP40-206ENST00000443711 B3GNT5Q9BYG0 378 aa16.76■□□□□ 0.27
USP40-206ENST00000443711 NSUN3Q9H649 340 aaKnown RBP16.76■□□□□ 0.27
USP40-206ENST00000443711 PTPRDP23468 1912 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 MTMR11A4FU01 709 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms