RNA–Protein interactions for RNA: ENST00000426280.3

GPC1-204, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 636 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-204ENST00000426280 NHLH1Q02575 133 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 PLD1Q13393 1074 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 KCNB1Q14721 858 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 ZCWPW2Q504Y3 356 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 CEP135Q66GS9 1140 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 ISM2Q6H9L7 571 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 DCP1BQ8IZD4 617 aaKnown RBP13.66□□□□□ -0.22
GPC1-204ENST00000426280 TMEM86AQ8N2M4 240 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 ELMOD1Q8N336 334 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 ZSCAN18Q8TBC5 510 aaPredicted RBP13.66□□□□□ -0.22
GPC1-204ENST00000426280 TMEM174Q8WUU8 243 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 MMS19Q96T76 1030 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 SMG9Q9H0W8 520 aaKnown RBP13.66□□□□□ -0.22
GPC1-204ENST00000426280 ATXN3LQ9H3M9 355 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 MFSD1Q9H3U5 465 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.66□□□□□ -0.22
GPC1-204ENST00000426280 TMEM30AQ9NV96 361 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 CGNQ9P2M7 1197 aaKnown RBP13.66□□□□□ -0.22
GPC1-204ENST00000426280 HSFX1Q9UBD0 423 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 ARIH1Q9Y4X5 557 aaPredicted RBP13.66□□□□□ -0.22
GPC1-204ENST00000426280 PCDHB5Q9Y5E4 795 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 PCDHA5Q9Y5H7 936 aa13.66□□□□□ -0.22
GPC1-204ENST00000426280 WDFY4Q6ZS81 3184 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 H0Y858 1186 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 F11P03951 625 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 TRIM49P0CI25 452 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 TRIM49CP0CI26 452 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 AOC1P19801 751 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 PRCPP42785 496 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 TUFMP49411 452 aaKnown RBP13.65□□□□□ -0.22
GPC1-204ENST00000426280 CLCN5P51795 746 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 CACNA2D1P54289 1103 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 PPP3CAQ08209 521 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 MYO1EQ12965 1108 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 WDR72Q3MJ13 1102 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 SLC44A4Q53GD3 710 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 SPOPLQ6IQ16 392 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 MTSS1LQ765P7 747 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 DPH6Q7L8W6 267 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 ARID3BQ8IVW6 561 aaPredicted RBP13.65□□□□□ -0.22
GPC1-204ENST00000426280 GUF1Q8N442 669 aaKnown RBP13.65□□□□□ -0.22
GPC1-204ENST00000426280 FAM200AQ8TCP9 573 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 SPPL2BQ8TCT7 592 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 SMARCD2Q92925 531 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 MYLPFQ96A32 169 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 ELSPBP1Q96BH3 223 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 FAM122AQ96E09 287 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 SLC46A2Q9BY10 475 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 TBC1D17Q9HA65 648 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 ARHGEF3Q9NR81 526 aa13.65□□□□□ -0.22
GPC1-204ENST00000426280 NXF1Q9UBU9 619 aaKnown RBP13.65□□□□□ -0.22
GPC1-204ENST00000426280 HEPACAM2A8MVW5 462 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 TADA3O75528 432 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 DCNP07585 359 aaKnown RBP13.64□□□□□ -0.23
GPC1-204ENST00000426280 LHX1P48742 406 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 STARD6P59095 220 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 MYL7Q01449 175 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 TSPY1Q01534 308 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 GPR158Q5T848 1215 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 SV2AQ7L0J3 742 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 SPATA20Q8TB22 786 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 RIN3Q8TB24 985 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 C2orf15Q8WU43 125 aaKnown RBP13.64□□□□□ -0.23
GPC1-204ENST00000426280 TIGD1Q96MW7 591 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 SYT15Q9BQS2 421 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 SMYD3Q9H7B4 428 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 ZFP14Q9HCL3 533 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 HEBP1Q9NRV9 189 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 DLGAP2Q9P1A6 1054 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 MAGED2Q9UNF1 606 aaPredicted RBP13.64□□□□□ -0.23
GPC1-204ENST00000426280 ASB3Q9Y575 518 aa13.64□□□□□ -0.23
GPC1-204ENST00000426280 SLC38A8A6NNN8 435 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 CLDN5O00501 218 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 STK25O00506 426 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 GALR2O43603 387 aaPredicted RBP13.63□□□□□ -0.23
GPC1-204ENST00000426280 KINO60870 393 aaKnown RBP13.63□□□□□ -0.23
GPC1-204ENST00000426280 TACC1O75410 805 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 PRAMEF12O95522 483 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 CD44P16070 742 aaKnown RBP13.63□□□□□ -0.23
GPC1-204ENST00000426280 BMP6P22004 513 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 BDNFP23560 247 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 NR2F2P24468 414 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 GNL1P36915 607 aaPredicted RBP13.63□□□□□ -0.23
GPC1-204ENST00000426280 NLRP12P59046 1061 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 USP46P62068 366 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 ORC1Q13415 861 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 FZD5Q13467 585 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 BIRC3Q13489 604 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 NCOA4Q13772 614 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 ZACNQ401N2 412 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 TXNDC8Q6A555 127 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 PAQR9Q6ZVX9 377 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 SCN4BQ8IWT1 228 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 LEMD2Q8NC56 503 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 OR6B3Q8NGW1 331 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 GOLGA5Q8TBA6 731 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 TMC2Q8TDI7 906 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 PCED1BQ96HM7 432 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 ZFYVE19Q96K21 471 aa13.63□□□□□ -0.23
GPC1-204ENST00000426280 SLC22A12Q96S37 553 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms