RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 MNAT1P51948 309 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 RPL7AP62424 266 aaKnown RBP11.28□□□□□ -0.6
CUX1-205ENST00000425244 ANKRD20A8PQ5CZ79 823 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 IQSEC1Q6DN90 963 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 SCARA5Q6ZMJ2 495 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 PLPPR4Q7Z2D5 763 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 TRIB2Q92519 343 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 FAM167AQ96KS9 214 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 C9orf72Q96LT7 481 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 TMEM109Q9BVC6 243 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 TRAIPQ9BWF2 469 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 SAMD15Q9P1V8 674 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 GINS2Q9Y248 185 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 STYXL1Q9Y6J8 313 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 CCDC189A1A4V9 331 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ZBTB42B2RXF5 422 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 PSTPIP1O43586 416 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 LGR5O75473 907 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 TTC4O95801 387 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ABCD1P33897 745 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ARL2P36404 184 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 CAPSQ13938 189 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 DGKDQ16760 1214 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 IZUMO3Q5VZ72 239 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 EFCAB12Q6NXP0 572 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 RHBDF2Q6PJF5 856 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 TRIM72Q6ZMU5 477 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 ANKS4BQ8N8V4 417 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 USP6NLQ92738 828 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 HAUS1Q96CS2 278 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 MTMR12Q9C0I1 747 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 SCINQ9Y6U3 715 aa11.28□□□□□ -0.6
CUX1-205ENST00000425244 RBM47A0AV96 593 aaKnown RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 TMEM120BA0PK00 339 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 LDHAP00338 332 aaKnown RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 KRT1P04264 644 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 HOXC6P09630 235 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 TBXAS1P24557 533 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 GSCP56915 257 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 TARBP2Q15633 366 aaKnown RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 CNGA2Q16280 664 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 HP1BP3Q5SSJ5 553 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 SYDE1Q6ZW31 735 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 RNF149Q8NC42 400 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 GDAP1Q8TB36 358 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 FEZF2Q8TBJ5 459 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 CD99L2Q8TCZ2 262 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 ZNF606Q8WXB4 792 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 MCEEQ96PE7 176 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 C16orf70Q9BSU1 422 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 HOMER3Q9NSC5 361 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 PARVAQ9NVD7 372 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 RNF186Q9NXI6 227 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 NINJ2Q9NZG7 142 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 MAFO75444 373 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 CST3P01034 146 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 C6orf222P0C671 652 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 OSTNP61366 133 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 ENPEPQ07075 957 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 KLF1Q13351 362 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 P3H1Q32P28 736 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 MFSD5Q6N075 450 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 DCUN1D2Q6PH85 259 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 CCDC91Q7Z6B0 441 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 KATNAL2Q8IYT4 538 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 ROPN1BQ9BZX4 212 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 ROPN1Q9HAT0 212 aaPredicted RBP11.27□□□□□ -0.61
CUX1-205ENST00000425244 HAUS2Q9NVX0 235 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 CNTNAP2Q9UHC6 1331 aa11.27□□□□□ -0.61
CUX1-205ENST00000425244 HBP1O60381 514 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 PGK1P00558 417 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 MYCP01106 439 aaPredicted RBP11.26□□□□□ -0.61
CUX1-205ENST00000425244 MYL3P08590 195 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 ZSCAN5DPP0CG00 497 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 CETN2P41208 172 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 SCTRP47872 440 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 MYL6P60660 151 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 TFAMQ00059 246 aaKnown RBP11.26□□□□□ -0.61
CUX1-205ENST00000425244 TMEM62Q0P6H9 643 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 NFX1Q12986 1120 aaKnown RBP11.26□□□□□ -0.61
CUX1-205ENST00000425244 PLEKHA7Q6IQ23 1121 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 CAPN12Q6ZSI9 719 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 PHF13Q86YI8 300 aaPredicted RBP11.26□□□□□ -0.61
CUX1-205ENST00000425244 CCDC89Q8N998 374 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 ACTR5Q9H9F9 607 aaPredicted RBP11.26□□□□□ -0.61
CUX1-205ENST00000425244 SLC40A1Q9NP59 571 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 SETD4Q9NVD3 440 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 GGT7Q9UJ14 662 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 ZNF148Q9UQR1 794 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 AKT3Q9Y243 479 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 KAT6AQ92794 2004 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 TCP11X1B4DZS4 312 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 F8VP50 259 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 ADCY3O60266 1144 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 VTNP04004 478 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 WEE2P0C1S8 567 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 RFC5P40937 340 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 C1QBPQ07021 282 aaKnown RBP11.26□□□□□ -0.61
CUX1-205ENST00000425244 LAMTOR4Q0VGL1 99 aa11.26□□□□□ -0.61
CUX1-205ENST00000425244 CCNG2Q16589 344 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms