RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 THTPAQ9BU02 230 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 SRP68Q9UHB9 627 aaKnown RBP11.23□□□□□ -0.61
USP54-204ENST00000422491 STRIP2Q9ULQ0 834 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 ZBTB12Q9Y330 459 aaPredicted RBP11.23□□□□□ -0.61
USP54-204ENST00000422491 FARP1Q9Y4F1 1045 aaPredicted RBP11.23□□□□□ -0.61
USP54-204ENST00000422491 SMIM31A0A1B0GVY4 71 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 ZNF862O60290 1169 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 FKBP6O75344 327 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 ITGA2BP08514 1039 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 FAM200BP0CF97 657 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 PHBP35232 272 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 GJC1P36383 396 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 MAGEA8P43361 318 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 MSLNQ13421 630 aaPredicted RBP11.23□□□□□ -0.61
USP54-204ENST00000422491 ALCAMQ13740 583 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 KLHL38Q2WGJ6 581 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 MSS51Q4VC12 460 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 C1orf146Q5VVC0 180 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 KYAT3Q6YP21 454 aaKnown RBP11.23□□□□□ -0.61
USP54-204ENST00000422491 RNF111Q6ZNA4 994 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 SH2D5Q6ZV89 423 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 SATL1Q86VE3 508 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 ATP11CQ8NB49 1132 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 TAS1R2Q8TE23 839 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 FAM172AQ8WUF8 416 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 MKL1Q969V6 931 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 MTBPQ96DY7 904 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 FAM111AQ96PZ2 611 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 C17orf75Q9HAS0 396 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 KLHL11Q9NVR0 708 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 KCNK4Q9NYG8 393 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 DRG1Q9Y295 367 aaKnown RBP11.23□□□□□ -0.61
USP54-204ENST00000422491 NRAPQ86VF7 1730 aa11.23□□□□□ -0.61
USP54-204ENST00000422491 ARHGEF35A5YM69 484 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 GOLGA8IPA6NC78 632 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 GOLGA8JA6NMD2 632 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 GOLGA8SH3BPF8 625 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 GOLGA8MH3BSY2 632 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 KLF11O14901 512 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 OPHN1O60890 802 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 OR6B1O95007 311 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 MAPTP10636 758 aaKnown RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 EEF2P13639 858 aaKnown RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 GPSM2P81274 684 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 MAP7Q14244 749 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 DNAL1Q4LDG9 190 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 SFT2D3Q587I9 215 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 KAZNQ674X7 775 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 AAGABQ6PD74 315 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 C3orf62Q6ZUJ4 267 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 RASSF3Q86WH2 238 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 CBWD2Q8IUF1 395 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 SLC25A41Q8N5S1 370 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 TTC17Q96AE7 1141 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 LENG1Q96BZ8 264 aaPredicted RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 APOPT1Q96IL0 206 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 LXNQ9BS40 222 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 KCNQ5Q9NR82 932 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 TAGLN3Q9UI15 199 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 DCAF8L1A6NGE4 600 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 PI4K2BG5E9Z4 385 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 HNRNPRO43390 633 aaKnown RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 KRT5P13647 590 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 UQCRBP14927 111 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 MED21Q13503 144 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 R3HDM1Q15032 1099 aaKnown RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 SHROOM1Q2M3G4 852 aaPredicted RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 ATP13A4Q4VNC1 1196 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 FNBP1LQ5T0N5 605 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 CCDC174Q6PII3 467 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 SAMD1Q6SPF0 538 aaPredicted RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 DHDDSQ86SQ9 333 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 PYROXD1Q8WU10 500 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 SERAC1Q96JX3 654 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 SLITRK1Q96PX8 696 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 UNC45AQ9H3U1 944 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 PCDH9Q9HC56 1237 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 TMEM8AQ9HCN3 771 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 S100A14Q9HCY8 104 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 RAB20Q9NX57 234 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 NARFQ9UHQ1 456 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 COL14A1Q05707 1796 aaKnown RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 SPECC1L-ADORA2AF8WAN1 911 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 GAS7O60861 476 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 TMCC1O94876 653 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 STIP1P31948 543 aaKnown RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 VCPP55072 806 aaKnown RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 SLC18A2Q05940 514 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 KDSRQ06136 332 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 ASPHQ12797 758 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 MAMLD1Q13495 774 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 SNRNP35Q16560 246 aaKnown RBP11.22□□□□□ -0.61
USP54-204ENST00000422491 MDH1BQ5I0G3 518 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 CIAPIN1Q6FI81 312 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 PADI6Q6TGC4 694 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 FBXL13Q8NEE6 735 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 SHKBP1Q8TBC3 707 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 CCDC127Q96BQ5 260 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 MPP4Q96JB8 637 aa11.22□□□□□ -0.61
USP54-204ENST00000422491 C1orf21Q9H246 121 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms