RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 ANKRD36BP1Q96IX9 119 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 LMAN1LQ9HAT1 526 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 MAGEF1Q9HAY2 307 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 KIAA1586Q9HCI6 787 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 DDX43Q9NXZ2 648 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 SMG5Q9UPR3 1016 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 R3HCC1Q9Y3T6 440 aaKnown RBP12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 DENND4CQ5VZ89 1909 aa12.42□□□□□ -0.42
SQSTM1-203ENST00000422245 CEP250Q9BV73 2442 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 UBE4BO95155 1302 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 MYBPHLA2RUH7 354 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 ZNF233A6NK53 670 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 SOBPA7XYQ1 873 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 SPECC1L-ADORA2AF8WAN1 911 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 CUTAO60888 179 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 OBSL1O75147 1896 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 TNNC2P02585 160 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 CSH1P0DML2 217 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 CSH2P0DML3 217 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 CHRNB1P11230 501 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 TDGF1P13385 188 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 HMGA1P17096 107 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 AVPR1AP37288 418 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 SOX9P48436 509 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 LHX1P48742 406 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 NLRP12P59046 1061 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 RPL10AP62906 217 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 MYO1EQ12965 1108 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 SURF1Q15526 300 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 CFAP221Q4G0U5 840 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 DGKKQ5KSL6 1271 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 FAM26FQ5R3K3 315 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 TSSK4Q6SA08 328 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 KIAA2013Q8IYS2 634 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 CMTM8Q8IZV2 173 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 SPEM1Q8N4L4 309 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 CELF5Q8N6W0 485 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 GIPC2Q8TF65 315 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 SECISBP2LQ93073 1101 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 DHX58Q96C10 678 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 FUBP3Q96I24 572 aaKnown RBP eCLIP12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 LRRC3BQ96PB8 259 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 PI4K2AQ9BTU6 479 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 PCIF1Q9H4Z3 704 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 KIF9Q9HAQ2 790 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 TMLHEQ9NVH6 421 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 INTS13Q9NVM9 706 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 THG1LQ9NWX6 298 aaKnown RBP12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 HSPBP1Q9NZL4 362 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 NCDNQ9UBB6 729 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 UXTQ9UBK9 157 aaPredicted RBP12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 SIX4Q9UIU6 781 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 SNX9Q9Y5X1 595 aa12.41□□□□□ -0.42
SQSTM1-203ENST00000422245 PRPF40AO75400 957 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 NOL4O94818 638 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 PAPSS2O95340 614 aaPredicted RBP12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 ACAT1P24752 427 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 CDR1P51861 262 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 TMEM150AQ86TG1 271 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 CBWD2Q8IUF1 395 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 WDR49Q8IV35 697 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 HSCBQ8IWL3 235 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 GPR161Q8N6U8 529 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 GLIS3Q8NEA6 775 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 MRPS31Q92665 395 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 TRMT2BQ96GJ1 504 aaKnown RBP12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 ZFYVE19Q96K21 471 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 FAM84AQ96KN4 292 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 PKMYT1Q99640 499 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 SLC46A2Q9BY10 475 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 GTSE1Q9NYZ3 720 aa12.4□□□□□ -0.42
SQSTM1-203ENST00000422245 PTPRJQ12913 1337 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 GABRDO14764 452 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 F11P03951 625 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 HSP90AA1P07900 732 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 CXCL12P48061 93 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 GPR15P49685 360 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 SNRPFP62306 86 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 ZNF268Q14587 947 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 DUOXA2Q1HG44 320 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 SOWAHAQ2M3V2 549 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 ITPRIPL2Q3MIP1 535 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 LMBRD2Q68DH5 695 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 TXNDC11Q6PKC3 985 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 SHC4Q6S5L8 630 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 C4orf50Q6ZRC1 276 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 EPM2AIP1Q7L775 607 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 DPH6Q7L8W6 267 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 LIMS2Q7Z4I7 341 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 MON1AQ86VX9 555 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 OSTM1Q86WC4 334 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 SPATA2LQ8IUW3 424 aaPredicted RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 GPIHBP1Q8IV16 184 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 SYNPOQ8N3V7 929 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 OR5B17Q8NGF7 314 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 HPS3Q969F9 1004 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 HPDLQ96IR7 371 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 C7orf25Q9BPX7 421 aa12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 SMG9Q9H0W8 520 aaKnown RBP12.39□□□□□ -0.43
SQSTM1-203ENST00000422245 AGPAT3Q9NRZ7 376 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms