RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ARSAP15289 507 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 PAX3P23760 479 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 CDC25CP30307 473 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 CCR3P51677 355 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 NLRP12P59046 1061 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 FOXK2Q01167 660 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 ARHGAP29Q52LW3 1261 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 NAIF1Q69YI7 327 aaPredicted RBP12.45□□□□□ -0.42
USP4-204ENST00000416417 OR5B17Q8NGF7 314 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 C8orf33Q9H7E9 229 aaPredicted RBP12.45□□□□□ -0.42
USP4-204ENST00000416417 HSFX1Q9UBD0 423 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 PCDHB13Q9Y5F0 798 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 SNX9Q9Y5X1 595 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 OTOGLQ3ZCN5 2332 aa12.45□□□□□ -0.42
USP4-204ENST00000416417 TCHHQ07283 1943 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.44□□□□□ -0.42
USP4-204ENST00000416417 FRMD3A2A2Y4 597 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 K7ESF4 209 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 EXTL3O43909 919 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 HUS1O60921 280 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 GARTP22102 1010 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 TGM1P22735 817 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 CASP1P29466 404 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 PXNP49023 591 aaPredicted RBP12.44□□□□□ -0.42
USP4-204ENST00000416417 TSPY1Q01534 308 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 SPEM2Q0P670 501 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 STK38Q15208 465 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 CBWD2Q8IUF1 395 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 CMTM8Q8IZV2 173 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 SPEM1Q8N4L4 309 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 USP13Q92995 863 aaPredicted RBP12.44□□□□□ -0.42
USP4-204ENST00000416417 EBF3Q9H4W6 596 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 HPS4Q9NQG7 708 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 OLFML3Q9NRN5 406 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 DNAH14Q0VDD8 3507 aa12.44□□□□□ -0.42
USP4-204ENST00000416417 STX6O43752 255 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 TADA3O75528 432 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 TMEM191BP0C7N4 346 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 HOXD13P35453 343 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 AVPR1AP37288 418 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 PNPLA4P41247 253 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 NRLP54845 237 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 PSMC1P62191 440 aaKnown RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 POU5F1Q01860 360 aaKnown RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 LRRC32Q14392 662 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 PUM1Q14671 1186 aaKnown RBP eCLIP12.43□□□□□ -0.42
USP4-204ENST00000416417 SOWAHAQ2M3V2 549 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 ITPRIPL2Q3MIP1 535 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 INTS6LQ5JSJ4 861 aaKnown RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 RALGPS2Q86X27 583 aaPredicted RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 SCN4BQ8IWT1 228 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 ADGRF2Q8IZF7 708 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 CELF5Q8N6W0 485 aaKnown RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 RDH13Q8NBN7 331 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 C2orf15Q8WU43 125 aaKnown RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 CACTINQ8WUQ7 758 aaKnown RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 DHX58Q96C10 678 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 CHFRQ96EP1 664 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 SLC22A12Q96S37 553 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 CYP2S1Q96SQ9 504 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 PKMYT1Q99640 499 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 TRPC7Q9HCX4 862 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 OBP2AQ9NY56 170 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 DLL3Q9NYJ7 618 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 NUP210Q8TEM1 1887 aaPredicted RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 KIF26AQ9ULI4 1882 aaPredicted RBP12.43□□□□□ -0.42
USP4-204ENST00000416417 F5P12259 2224 aa12.43□□□□□ -0.42
USP4-204ENST00000416417 LDHAP00338 332 aaKnown RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 LMO2P25791 158 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 NASPP49321 788 aaPredicted RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 RBP5P82980 135 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 MYL7Q01449 175 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 CCINQ13939 588 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 SIM2Q14190 667 aaPredicted RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 PPP2R5DQ14738 602 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 NT5DC4Q86YG4 428 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 CCDC65Q8IXS2 484 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 GPD1LQ8N335 351 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 LINC00301Q8NCQ3 95 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 ACBD6Q9BR61 282 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 FAM126AQ9BYI3 521 aaPredicted RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 FBRSL1Q9HCM7 1045 aaKnown RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 THG1LQ9NWX6 298 aaKnown RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 GMEB2Q9UKD1 530 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 ITGA11Q9UKX5 1188 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 RAB23Q9ULC3 237 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 DCDC2BA2VCK2 349 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 K7ELQ4 463 aaPredicted RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 CLIC2O15247 247 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 SPTLC2O15270 562 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 PDGFRBP09619 1106 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 CSH1P0DML2 217 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 CSH2P0DML3 217 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 ATXN1P54253 815 aaKnown RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 MLLT6P55198 1093 aaPredicted RBP12.42□□□□□ -0.42
USP4-204ENST00000416417 ASIC1P78348 528 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 SMARCB1Q12824 385 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 RUNX3Q13761 415 aa12.42□□□□□ -0.42
USP4-204ENST00000416417 E2F4Q16254 413 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms