RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 SPATA5Q8NB90 893 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 SLC17A8Q8NDX2 589 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 NUP133Q8WUM0 1156 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 IPCEF1Q8WWN9 437 aaPredicted RBP5.55□□□□□ -1.52
VPS54-204ENST00000416400 KLHL32Q96NJ5 620 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 CNPPD1Q9BV87 410 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 EIF2AQ9BY44 585 aaKnown RBP5.55□□□□□ -1.52
VPS54-204ENST00000416400 STK33Q9BYT3 514 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 IMPG2Q9BZV3 1241 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 LUZP4Q9P127 313 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 CEP72Q9P209 647 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 ZNF212Q9UDV6 495 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 AGAP1Q9UPQ3 857 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 MTO1Q9Y2Z2 717 aaKnown RBP5.55□□□□□ -1.52
VPS54-204ENST00000416400 NOX1Q9Y5S8 564 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 FPGT-TNNI3KV9GXZ4 949 aa5.55□□□□□ -1.52
VPS54-204ENST00000416400 CLCA1A8K7I4 914 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 KRTAP9-7A8MTY7 169 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 TMEM233B4DJY2 109 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 PLSCR1O15162 318 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 SKAP2O75563 359 aaPredicted RBP5.54□□□□□ -1.52
VPS54-204ENST00000416400 RASSF9O75901 435 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 MYL4P12829 197 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 LAG3P18627 525 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 GCSHP23434 173 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 GRK6P43250 576 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 ALDH9A1P49189 494 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 CSRP2Q16527 193 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 AMOTQ4VCS5 1084 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 TIGD2Q4W5G0 525 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 PRR16Q569H4 304 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 FAM102AQ5T9C2 384 aaPredicted RBP5.54□□□□□ -1.52
VPS54-204ENST00000416400 AGAP9Q5VTM2 703 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 CATSPERGQ6ZRH7 1159 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 YAF2Q8IY57 180 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 SMAP1Q8IYB5 467 aaPredicted RBP5.54□□□□□ -1.52
VPS54-204ENST00000416400 PDPRQ8NCN5 879 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 FAM46DQ8NEK8 389 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 OR56A1Q8NGH5 318 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 OR56A3Q8NH54 315 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 TRIM63Q969Q1 353 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 SPSB4Q96A44 273 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 EVI5LQ96CN4 794 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 LTV1Q96GA3 475 aaPredicted RBP5.54□□□□□ -1.52
VPS54-204ENST00000416400 PNKPQ96T60 521 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 SPATA5L1Q9BVQ7 753 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.54□□□□□ -1.52
VPS54-204ENST00000416400 CHST8Q9H2A9 424 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 NRDE2Q9H7Z3 1164 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 AKIP1Q9NQ31 210 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 GJB4Q9NTQ9 266 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 XPR1Q9UBH6 696 aa5.54□□□□□ -1.52
VPS54-204ENST00000416400 E9PLN8 166 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 PLA2G6O60733 806 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 KIF20AO95235 890 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 GPANK1O95872 356 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 TXNP10599 105 aaKnown RBP5.53□□□□□ -1.52
VPS54-204ENST00000416400 IL1R1P14778 569 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 PIGFQ07326 219 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 PDCD4Q53EL6 469 aaKnown RBP5.53□□□□□ -1.52
VPS54-204ENST00000416400 FAM160B1Q5W0V3 765 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 ARMC6Q6NXE6 501 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 TLDC1Q6P9B6 456 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 FBXO38Q6PIJ6 1188 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 MYCT1Q8N699 235 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 HAS1Q92839 578 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 LRRC46Q96FV0 321 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 VKORC1Q9BQB6 163 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 MS4A7Q9GZW8 240 aaPredicted RBP5.53□□□□□ -1.52
VPS54-204ENST00000416400 AGO4Q9HCK5 861 aaKnown RBP5.53□□□□□ -1.52
VPS54-204ENST00000416400 HDAC9Q9UKV0 1011 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 MAN2B2Q9Y2E5 1009 aa5.53□□□□□ -1.52
VPS54-204ENST00000416400 A0A1B0GTW7 788 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 GOLGA6L3A6NEY3 463 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 GRXCR1A8MXD5 290 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 AHRRA9YTQ3 701 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 PODXLO00592 558 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 HNRNPDLO14979 420 aaKnown RBP5.52□□□□□ -1.53
VPS54-204ENST00000416400 AREL1O15033 823 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 ZNF185O15231 689 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 NCR1O76036 304 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 NDUFA10O95299 355 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 FGAP02671 866 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 CSTBP04080 98 aaKnown RBP5.52□□□□□ -1.53
VPS54-204ENST00000416400 IL1R2P27930 398 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 PTTG1IPP53801 180 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 WNT3P56703 355 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 ZNF844Q08AG5 666 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 BIRC3Q13489 604 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 NOMO2Q5JPE7 1267 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 MIIPQ5JXC2 388 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 RRAGBQ5VZM2 374 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 USP51Q70EK9 711 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 PPP1R32Q7Z5V6 425 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 ZNF354CQ86Y25 554 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 MAPKAPK5Q8IW41 473 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 CACTINQ8WUQ7 758 aaKnown RBP5.52□□□□□ -1.53
VPS54-204ENST00000416400 MUL1Q969V5 352 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 ZNF503Q96F45 646 aa5.52□□□□□ -1.53
VPS54-204ENST00000416400 MARS2Q96GW9 593 aaKnown RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms