RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SLC29A2Q14542 456 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 ATP13A5Q4VNC0 1218 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 BROXQ5VW32 411 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 HAVCR1Q96D42 359 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 EGFL8Q99944 293 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 KATNAL1Q9BW62 490 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 JMJD4Q9H9V9 463 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 UBE2QL1A1L167 161 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 RGS4P49798 205 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 ENPEPQ07075 957 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 KRT24Q2M2I5 525 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 NDUFAF6Q330K2 333 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 RFX8Q6ZV50 586 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 FLAD1Q8NFF5 587 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 BLOC1S5Q8TDH9 187 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SCFD2Q8WU76 684 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 EXT2Q93063 718 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 FAM20AQ96MK3 541 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 CHCHD6Q9BRQ6 235 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 UGT2B28Q9BY64 529 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 CCNB1IP1Q9NPC3 277 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 BAIAP2Q9UQB8 552 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SNX13Q9Y5W8 968 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 TSC22D2O75157 780 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 DRAP1Q14919 205 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-206ENST00000409809 CAPSLQ8WWF8 208 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 OSBPL11Q9BXB4 747 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 HDHD2Q9H0R4 259 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 GPAMQ9HCL2 828 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 MLH3Q9UHC1 1453 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 NCOA3Q9Y6Q9 1424 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 TESPA1A2RU30 521 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-206ENST00000409809 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-206ENST00000409809 DCAF15Q66K64 600 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 TSPAN14Q8NG11 270 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 ANKS1AQ92625 1134 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 HEXIM2Q96MH2 286 aaKnown RBP13.39□□□□□ -0.27
COL6A3-206ENST00000409809 MRPL39Q9NYK5 338 aaKnown RBP13.39□□□□□ -0.27
COL6A3-206ENST00000409809 TMCC3Q9ULS5 477 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 AATKQ6ZMQ8 1374 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 RAD51CO43502 376 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 TRAPPC3O43617 180 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SPIRE1Q08AE8 756 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 C3orf62Q6ZUJ4 267 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SZRD1Q7Z422 152 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 GPIHBP1Q8IV16 184 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 OR6Y1Q8NGX8 325 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SEPT9Q9UHD8 586 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-206ENST00000409809 ACTL7BQ9Y614 415 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 MAP3K19Q56UN5 1328 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 FAM92AA1XBS5 289 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 ZNF699Q32M78 642 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 UGT3A1Q6NUS8 523 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SLC22A9Q8IVM8 553 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 RAD54LQ92698 747 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 HEY2Q9UBP5 337 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SFMBT1Q9UHJ3 866 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 CASP4P49662 377 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SEC24CP53992 1094 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 CWF19L1Q69YN2 538 aaKnown RBP13.39□□□□□ -0.27
COL6A3-206ENST00000409809 SH3BP4Q9P0V3 963 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 HAO1Q9UJM8 370 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 ZNF521Q96K83 1311 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 EFCAB10A6NFE3 127 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 C3orf70A6NLC5 250 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-206ENST00000409809 USP17L12C9JPN9 530 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 USP17L21D6R901 530 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 HEY1Q9Y5J3 304 aa13.39□□□□□ -0.27
COL6A3-206ENST00000409809 ADCY10Q96PN6 1610 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 HEATR9A2RTY3 570 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 GDF11O95390 407 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 PDGFRBP09619 1106 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 PRKAR1AP10644 381 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 GNA15P30679 374 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 FDFT1P37268 417 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 EIF3EP60228 445 aaKnown RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 NSUN2Q08J23 767 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 AGAP9Q5VTM2 703 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 MOSPD2Q8NHP6 518 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 QRICH2Q9H0J4 1663 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 A0A0A6YYK5 440 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 CCND2P30279 289 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 ACAP2Q15057 778 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 TDRD5Q8NAT2 981 aaKnown RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 EZH1Q92800 747 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 RAPGEFL1Q9UHV5 662 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 CYP2E1P05181 493 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 TRIM65Q6PJ69 517 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 PI4K2BQ8TCG2 481 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 UBASH3BQ8TF42 649 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 PTPRN2Q92932 1015 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 F8W031 263 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 PDHBP11177 359 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 STIP1P31948 543 aaKnown RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 CASP5P51878 434 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 CHI3L2Q15782 390 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 ARID3BQ8IVW6 561 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 SNIP1Q8TAD8 396 aaKnown RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 EAF2Q96CJ1 260 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 COX4I2Q96KJ9 171 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms