RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 EN2P19622 333 aaPredicted RBP13.2□□□□□ -0.3
CHMP3-204ENST00000409727 MMP8P22894 467 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 WARSP23381 471 aaKnown RBP13.2□□□□□ -0.3
CHMP3-204ENST00000409727 AMPD2Q01433 879 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 PAPD7Q5XG87 772 aaKnown RBP13.2□□□□□ -0.3
CHMP3-204ENST00000409727 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.2□□□□□ -0.31e-9■■■■□ 20.2
CHMP3-204ENST00000409727 TRIM43Q96BQ3 446 aaPredicted RBP13.2□□□□□ -0.3
CHMP3-204ENST00000409727 CARD6Q9BX69 1037 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 TLR10Q9BXR5 811 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 TRIM7Q9C029 511 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 LHX5Q9H2C1 402 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 FAM124BQ9H5Z6 455 aaPredicted RBP13.2□□□□□ -0.3
CHMP3-204ENST00000409727 SYNCQ9H7C4 482 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 ST7Q9NRC1 585 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 DDX43Q9NXZ2 648 aaKnown RBP13.2□□□□□ -0.3
CHMP3-204ENST00000409727 HCSTQ9UBK5 93 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 KIAA1257Q9ULG3 409 aa13.2□□□□□ -0.3
CHMP3-204ENST00000409727 PRG3Q9Y2Y8 225 aaPredicted RBP13.2□□□□□ -0.3
CHMP3-204ENST00000409727 INPPL1O15357 1258 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 PARNO95453 639 aaKnown RBP13.19□□□□□ -0.3
CHMP3-204ENST00000409727 CSF2RAP15509 400 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 CDH5P33151 784 aaPredicted RBP13.19□□□□□ -0.3
CHMP3-204ENST00000409727 PTP4A2Q12974 167 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 PTPN20Q4JDL3 420 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 MEI1Q5TIA1 1274 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 LCLAT1Q6UWP7 414 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 LIMS2Q7Z4I7 341 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 COLGALT2Q8IYK4 626 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 SYCE1Q8N0S2 351 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 UROC1Q96N76 676 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 CPXM1Q96SM3 734 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 ZNF518BQ9C0D4 1074 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 ELAC1Q9H777 363 aaKnown RBP13.19□□□□□ -0.3
CHMP3-204ENST00000409727 CDC23Q9UJX2 597 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 ANAPC7Q9UJX3 599 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 SNX12Q9UMY4 172 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.19□□□□□ -0.3
CHMP3-204ENST00000409727 TBKBP1A7MCY6 615 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 GOLGA8SH3BPF8 625 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 TULP2O00295 520 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 SLU7O95391 586 aaKnown RBP13.19□□□□□ -0.3
CHMP3-204ENST00000409727 CALB1P05937 261 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 RAG1P15918 1043 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 GPD2P43304 727 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 RGS7P49802 495 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 BCAR1P56945 870 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 MAMLD1Q13495 774 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 IKBKEQ14164 716 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 KIAA0319Q5VV43 1072 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 DCLRE1AQ6PJP8 1040 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 CD300LGQ6UXG3 332 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 TTC30AQ86WT1 665 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 CPNE8Q86YQ8 564 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 B3GALNT2Q8NCR0 500 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 MNS1Q8NEH6 495 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 SLC2A14Q8TDB8 520 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 COG1Q8WTW3 980 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 TNIP3Q96KP6 325 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 CASD1Q96PB1 797 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 OSBPL9Q96SU4 736 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 KANSL3Q9P2N6 904 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 UVRAGQ9P2Y5 699 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 HESX1Q9UBX0 185 aa13.19□□□□□ -0.3
CHMP3-204ENST00000409727 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.19□□□□□ -0.3
CHMP3-204ENST00000409727 V9GYY5 206 aaPredicted RBP13.19□□□□□ -0.3
CHMP3-204ENST00000409727 UQCRHLA0A096LP55 91 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 ERBB2P04626 1255 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 UQCRHP07919 91 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 PFKMP08237 780 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 ODC1P11926 461 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 AARSP49588 968 aaKnown RBP eCLIP13.18□□□□□ -0.3
CHMP3-204ENST00000409727 DSC1Q08554 894 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 PDCLQ13371 301 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 RPS6KA1Q15418 735 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 MDH1BQ5I0G3 518 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 PPP1R2P3Q6NXS1 205 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 TMCO2Q7Z6W1 182 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-204ENST00000409727 SLFN11Q7Z7L1 901 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 NT5DC3Q86UY8 548 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 NPAS4Q8IUM7 802 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 CRYBG2Q8N1P7 616 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 MYRIPQ8NFW9 859 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 RSPH1Q8WYR4 309 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 VCPIP1Q96JH7 1222 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 AVENQ9NQS1 362 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-204ENST00000409727 AMFRQ9UKV5 643 aa13.18□□□□□ -0.3
CHMP3-204ENST00000409727 CLDN5O00501 218 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 GABRDO14764 452 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 TIMP1P01033 207 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 ACRP10323 421 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 PTPN1P18031 435 aaKnown RBP13.17□□□□□ -0.3
CHMP3-204ENST00000409727 TKTP29401 623 aaKnown RBP13.17□□□□□ -0.3
CHMP3-204ENST00000409727 PBX3P40426 434 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 DAB2IPQ5VWQ8 1189 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 SMYD5Q6GMV2 418 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 FAM117BQ6P1L5 589 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 DNAJC24Q6P3W2 148 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 CNKSR3Q6P9H4 555 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 METTL23Q86XA0 190 aa13.17□□□□□ -0.3
CHMP3-204ENST00000409727 TMEM86AQ8N2M4 240 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms