RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 CAMK1Q14012 370 aa21.78■■□□□ 1.08
VSX1-203ENST00000409285 MAPRE1Q15691 268 aaKnown RBP21.78■■□□□ 1.08
VSX1-203ENST00000409285 ASIC2Q16515 512 aa21.78■■□□□ 1.08
VSX1-203ENST00000409285 ZNF394Q53GI3 561 aa21.78■■□□□ 1.08
VSX1-203ENST00000409285 MYCBPAPQ8TBZ2 947 aa21.78■■□□□ 1.08
VSX1-203ENST00000409285 CRTAC1Q9NQ79 661 aa21.78■■□□□ 1.08
VSX1-203ENST00000409285 BZW2Q9Y6E2 419 aaKnown RBP21.78■■□□□ 1.08
VSX1-203ENST00000409285 ZNF638Q14966 1978 aaKnown RBP21.77■■□□□ 1.08
VSX1-203ENST00000409285 PDGFRBP09619 1106 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 VDRP11473 427 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 PTPN1P18031 435 aaKnown RBP21.77■■□□□ 1.08
VSX1-203ENST00000409285 ACAT1P24752 427 aaKnown RBP21.77■■□□□ 1.08
VSX1-203ENST00000409285 GNA15P30679 374 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 PDE6CP51160 858 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 CDK17Q00537 523 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 SMARCB1Q12824 385 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 SMC1AQ14683 1233 aaKnown RBP21.77■■□□□ 1.08
VSX1-203ENST00000409285 HGSNATQ68CP4 663 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 PRSS55Q6UWB4 352 aaPredicted RBP21.77■■□□□ 1.08
VSX1-203ENST00000409285 ACOT1Q86TX2 421 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 SLC47A2Q86VL8 602 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 ZNF677Q86XU0 584 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 ARNTL2Q8WYA1 636 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 PPP1R9BQ96SB3 815 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 TCF25Q9BQ70 676 aa21.77■■□□□ 1.08
VSX1-203ENST00000409285 NOCTQ9UK39 431 aaKnown RBP21.77■■□□□ 1.08
VSX1-203ENST00000409285 ERVFC1P60507 584 aa21.77■■□□□ 1.07
VSX1-203ENST00000409285 STILQ15468 1287 aa21.77■■□□□ 1.07
VSX1-203ENST00000409285 TSR1Q2NL82 804 aaKnown RBP21.77■■□□□ 1.07
VSX1-203ENST00000409285 SGO2Q562F6 1265 aa21.77■■□□□ 1.07
VSX1-203ENST00000409285 ARHGAP17Q68EM7 881 aa21.77■■□□□ 1.07
VSX1-203ENST00000409285 WDR59Q6PJI9 974 aa21.77■■□□□ 1.07
VSX1-203ENST00000409285 TMC7Q7Z402 723 aa21.77■■□□□ 1.07
VSX1-203ENST00000409285 DCP1BQ8IZD4 617 aaKnown RBP21.77■■□□□ 1.07
VSX1-203ENST00000409285 CLSTN3Q9BQT9 956 aa21.77■■□□□ 1.07
VSX1-203ENST00000409285 ENTPD7Q9NQZ7 604 aa21.77■■□□□ 1.07
VSX1-203ENST00000409285 C1RP00736 705 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 SERPING1P05155 500 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 NDUFV1P49821 464 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 PSMC1P62191 440 aaKnown RBP21.76■■□□□ 1.07
VSX1-203ENST00000409285 GPR17Q13304 367 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 ORC1Q13415 861 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 NFE2Q16621 373 aaPredicted RBP21.76■■□□□ 1.07
VSX1-203ENST00000409285 ZNF697Q5TEC3 545 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 RSPO2Q6UXX9 243 aaPredicted RBP21.76■■□□□ 1.07
VSX1-203ENST00000409285 MRPL43Q8N983 215 aaKnown RBP21.76■■□□□ 1.07
VSX1-203ENST00000409285 DDX1Q92499 740 aaKnown RBP21.76■■□□□ 1.07
VSX1-203ENST00000409285 SYT11Q9BT88 431 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 ZNF576Q9H609 170 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 ZNHIT6Q9NWK9 470 aaKnown RBP21.76■■□□□ 1.07
VSX1-203ENST00000409285 CDY1Q9Y6F8 540 aa21.76■■□□□ 1.07
VSX1-203ENST00000409285 MYBPHLA2RUH7 354 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 C2CD2LO14523 706 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 MED7O43513 233 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 ATP2C2O75185 946 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 GOLGA8FQ08AF8 430 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 GOLGA8DPQ0D2H9 430 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 CCDC186Q7Z3E2 898 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 NOP9Q86U38 636 aaKnown RBP21.75■■□□□ 1.07
VSX1-203ENST00000409285 LRRTM3Q86VH5 581 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 C12orf29Q8N999 325 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 C2orf15Q8WU43 125 aaKnown RBP21.75■■□□□ 1.07
VSX1-203ENST00000409285 ZNF606Q8WXB4 792 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 TFAP2BQ92481 460 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 FUBP3Q96I24 572 aaKnown RBP eCLIP21.75■■□□□ 1.07
VSX1-203ENST00000409285 HEXIM2Q96MH2 286 aaKnown RBP21.75■■□□□ 1.07
VSX1-203ENST00000409285 TMEM209Q96SK2 561 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 ZSWIM1Q9BR11 485 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 CERS4Q9HA82 394 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 ACP6Q9NPH0 428 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 PCDHGC3Q9UN70 934 aa21.75■■□□□ 1.07
VSX1-203ENST00000409285 C2orf71A6NGG8 1288 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 EPOPA6NHQ4 379 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 O00370 1275 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 ANXA13P27216 316 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 CDR2Q01850 454 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 ROR1Q01973 937 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 ARID5AQ03989 594 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 KLHL30Q0D2K2 578 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 RAB33AQ14088 237 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 CNGA2Q16280 664 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 CFAP221Q4G0U5 840 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 TPGS2Q68CL5 300 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 LCLAT1Q6UWP7 414 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 C4orf50Q6ZRC1 276 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 FUKQ8N0W3 1084 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 AUTS2Q8WXX7 1259 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 PCED1BQ96HM7 432 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 HNRNPABQ99729 332 aaKnown RBP21.74■■□□□ 1.07
VSX1-203ENST00000409285 ABCB6Q9NP58 842 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 HSFX1Q9UBD0 423 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 GTF3C4Q9UKN8 822 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 MAFFQ9ULX9 164 aa21.74■■□□□ 1.07
VSX1-203ENST00000409285 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.74■■□□□ 1.07
VSX1-203ENST00000409285 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.73■■□□□ 1.07
VSX1-203ENST00000409285 SSU72P8A0A1W2PR75 194 aa21.73■■□□□ 1.07
VSX1-203ENST00000409285 TEX28O15482 410 aa21.73■■□□□ 1.07
VSX1-203ENST00000409285 THAP12O43422 761 aa21.73■■□□□ 1.07
VSX1-203ENST00000409285 LPXNO60711 386 aa21.73■■□□□ 1.07
VSX1-203ENST00000409285 CXCL14O95715 111 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms