RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 NHEJ1Q9H9Q4 299 aaPredicted RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 NOCTQ9UK39 431 aaKnown RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 OR6C75A6NL08 312 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 MMEP08473 750 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 SSTR3P32745 418 aaPredicted RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 DEKP35659 375 aaKnown RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 CDR2Q01850 454 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 KIAA0319Q5VV43 1072 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 TMC7Q7Z402 723 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 LNX1Q8TBB1 728 aaPredicted RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 TMEM209Q96SK2 561 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 MED10Q9BTT4 135 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 OXCT2Q9BYC2 517 aaPredicted RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 CERS4Q9HA82 394 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 CRTAC1Q9NQ79 661 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 MRPL17Q9NRX2 175 aaKnown RBP19.2■□□□□ 0.66
SDC1-203ENST00000403076 GTF3C4Q9UKN8 822 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 LZTS1Q9Y250 596 aa19.2■□□□□ 0.66
SDC1-203ENST00000403076 SSU72P8A0A1W2PR75 194 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 MYBPHLA2RUH7 354 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 SOWAHDA6NJG2 315 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 C5orf67F2Z3F1 127 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 CSPG5O95196 566 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 CPB1P15086 417 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 FECHP22830 423 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 ADORA2BP29275 332 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 CYLC1P35663 651 aaPredicted RBP19.19■□□□□ 0.66
SDC1-203ENST00000403076 CDR1P51861 262 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 MAPK8IP2Q13387 824 aaPredicted RBP19.19■□□□□ 0.66
SDC1-203ENST00000403076 STILQ15468 1287 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 MAPRE1Q15691 268 aaKnown RBP19.19■□□□□ 0.66
SDC1-203ENST00000403076 PPP1R26Q5T8A7 1209 aaPredicted RBP19.19■□□□□ 0.66
SDC1-203ENST00000403076 TMEM139Q8IV31 216 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 GLYCTKQ8IVS8 523 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 MYCBPAPQ8TBZ2 947 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 SPPL3Q8TCT6 385 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 AUTS2Q8WXX7 1259 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 GBF1Q92538 1859 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 TRIM44Q96DX7 344 aaPredicted RBP19.19■□□□□ 0.66
SDC1-203ENST00000403076 ENTPD7Q9NQZ7 604 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 HESX1Q9UBX0 185 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 SSX2IPQ9Y2D8 614 aa19.19■□□□□ 0.66
SDC1-203ENST00000403076 CXCL14O95715 111 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 OR4Q2P0C623 313 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 CCDC130P13994 396 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 CHRNB2P17787 502 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 RPL17P18621 184 aaKnown RBP19.18■□□□□ 0.66
SDC1-203ENST00000403076 SMAD3P84022 425 aaKnown RBP19.18■□□□□ 0.66
SDC1-203ENST00000403076 CYP27A1Q02318 531 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 UBE3AQ05086 875 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 GPM6BQ13491 265 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 CNGA2Q16280 664 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 CCDC170Q8IYT3 715 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 MICAL1Q8TDZ2 1067 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 POF1BQ8WVV4 589 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 DDX1Q92499 740 aaKnown RBP19.18■□□□□ 0.66
SDC1-203ENST00000403076 ZSWIM1Q9BR11 485 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 ZCWPW1Q9H0M4 648 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 ZBP1Q9H171 429 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 PRO3102Q9H379 93 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 MTRRQ9UBK8 725 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 ADAMTS1Q9UHI8 967 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 BACE2Q9Y5Z0 518 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 CDY1Q9Y6F8 540 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 VWA8A3KMH1 1905 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 NLRC5Q86WI3 1866 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 TSC2P49815 1807 aa19.18■□□□□ 0.66
SDC1-203ENST00000403076 O00370 1275 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 ARHGAP6O43182 974 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 LPXNO60711 386 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 CTSAP10619 480 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 KIF11P52732 1056 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 CCZ1BP86790 482 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 CCZ1P86791 482 aaPredicted RBP19.17■□□□□ 0.66
SDC1-203ENST00000403076 FMO1Q01740 532 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 CCDC142Q17RM4 750 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 GOLGA7BQ2TAP0 167 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 SLC39A12Q504Y0 691 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 ARHGAP17Q68EM7 881 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 LRRTM3Q86VH5 581 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 SPATA2LQ8IUW3 424 aaPredicted RBP19.17■□□□□ 0.66
SDC1-203ENST00000403076 PASD1Q8IV76 773 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 SLC2A14Q8TDB8 520 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 ARNTL2Q8WYA1 636 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 TIFAQ96CG3 184 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.17■□□□□ 0.66
SDC1-203ENST00000403076 TSPAN16Q9UKR8 245 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 CEP83Q9Y592 693 aa19.17■□□□□ 0.66
SDC1-203ENST00000403076 EPN1Q9Y6I3 576 aaPredicted RBP19.17■□□□□ 0.66
SDC1-203ENST00000403076 ATP8B3O60423 1300 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 M0QYV0 167 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 MICAL2O94851 1124 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 IPO7O95373 1038 aaKnown RBP19.16■□□□□ 0.66
SDC1-203ENST00000403076 ANXA13P27216 316 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 OR1D2P34982 312 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 CREMQ03060 361 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 NFE2Q16621 373 aaPredicted RBP19.16■□□□□ 0.66
SDC1-203ENST00000403076 FAM171BQ6P995 826 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 LCLAT1Q6UWP7 414 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 TRIM72Q6ZMU5 477 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms