RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 HUS1O60921 280 aa12.42□□□□□ -0.42
SKA3-203ENST00000400018 TIMP1P01033 207 aa12.42□□□□□ -0.42
SKA3-203ENST00000400018 TBXAS1P24557 533 aaPredicted RBP12.42□□□□□ -0.42
SKA3-203ENST00000400018 MARCKSL1P49006 195 aa12.42□□□□□ -0.42
SKA3-203ENST00000400018 AP3M2P53677 418 aa12.42□□□□□ -0.42
SKA3-203ENST00000400018 BMS1Q14692 1282 aaKnown RBP12.42□□□□□ -0.42
SKA3-203ENST00000400018 GOLGA7BQ2TAP0 167 aa12.42□□□□□ -0.42
SKA3-203ENST00000400018 PRSS55Q6UWB4 352 aaPredicted RBP12.42□□□□□ -0.42
SKA3-203ENST00000400018 RTP3Q9BQQ7 232 aa12.42□□□□□ -0.42
SKA3-203ENST00000400018 KLHL11Q9NVR0 708 aa12.42□□□□□ -0.42
SKA3-203ENST00000400018 PCDHGC5Q9Y5F6 944 aa12.42□□□□□ -0.42
SKA3-203ENST00000400018 ARHGEF15O94989 841 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 H2AFZP0C0S5 128 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 NDUFV1P49821 464 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 NOMO3P69849 1222 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 KRT83P78385 493 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 MESDQ14696 234 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 PCBP1Q15365 356 aaKnown RBP eCLIP12.41□□□□□ -0.42
SKA3-203ENST00000400018 PTPN20Q4JDL3 420 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 RSPO2Q6UXX9 243 aaPredicted RBP12.41□□□□□ -0.42
SKA3-203ENST00000400018 H2AFVQ71UI9 128 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 APBB1IPQ7Z5R6 666 aaPredicted RBP12.41□□□□□ -0.42
SKA3-203ENST00000400018 ADAT2Q7Z6V5 191 aaKnown RBP12.41□□□□□ -0.42
SKA3-203ENST00000400018 COLGALT2Q8IYK4 626 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 FEZF2Q8TBJ5 459 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 MS4A14Q96JA4 679 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 FAM193BQ96PV7 902 aaPredicted RBP12.41□□□□□ -0.42
SKA3-203ENST00000400018 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.41□□□□□ -0.426e-14■■■■□ 20.1
SKA3-203ENST00000400018 NUCKS1Q9H1E3 243 aaKnown RBP12.41□□□□□ -0.42
SKA3-203ENST00000400018 CERS4Q9HA82 394 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 CRTAC1Q9NQ79 661 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 CTTNBP2NLQ9P2B4 639 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 BARX2Q9UMQ3 279 aaPredicted RBP12.41□□□□□ -0.42
SKA3-203ENST00000400018 NENFQ9UMX5 172 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 PFKMP08237 780 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 UNGP13051 313 aaPredicted RBP12.41□□□□□ -0.42
SKA3-203ENST00000400018 CA8P35219 290 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 GPR15P49685 360 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 ETF1P62495 437 aaKnown RBP12.41□□□□□ -0.42
SKA3-203ENST00000400018 FAM189BP81408 668 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 CLEC16AQ2KHT3 1053 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 SH3PXD2AQ5TCZ1 1133 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 PMF1Q6P1K2 205 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 SCUBE3Q8IX30 993 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 TOX2Q96NM4 488 aa12.41□□□□□ -0.42
SKA3-203ENST00000400018 GRID2IPA4D2P6 1211 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 ADAM12O43184 909 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 BUB1BO60566 1050 aaPredicted RBP12.4□□□□□ -0.42
SKA3-203ENST00000400018 LCA5LO95447 670 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 ERBB2P04626 1255 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 TUSC3Q13454 348 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 IKBKEQ14164 716 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 TERF2Q15554 542 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 USP38Q8NB14 1042 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 KHSRPQ92945 711 aaKnown RBP eCLIP12.4□□□□□ -0.42
SKA3-203ENST00000400018 PGBD4Q96DM1 585 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 NT5C1AQ9BXI3 368 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 MAGEB5Q9BZ81 275 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 ZNF518BQ9C0D4 1074 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 SNX25Q9H3E2 840 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 TMEM161AQ9NX61 479 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 CNOT8Q9UFF9 292 aaKnown RBP12.4□□□□□ -0.42
SKA3-203ENST00000400018 USTQ9Y2C2 406 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 STXBP5LQ9Y2K9 1186 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 MICAL3Q7RTP6 2002 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 LCP1P13796 627 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 WDR5P61964 334 aaKnown RBP12.4□□□□□ -0.42
SKA3-203ENST00000400018 C9orf50Q5SZB4 431 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 FAM171A1Q5VUB5 890 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 GPRIN1Q7Z2K8 1008 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 CD302Q8IX05 232 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 CRIPAKQ8N1N5 446 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 COG1Q8WTW3 980 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 NUP85Q9BW27 656 aa12.4□□□□□ -0.42
SKA3-203ENST00000400018 RALGAPA2Q2PPJ7 1873 aa12.4□□□□□ -0.43
SKA3-203ENST00000400018 KIF5CO60282 957 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 TADA2AO75478 443 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 CXCL10P02778 98 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 LRPAP1P30533 357 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 GRIK3Q13003 919 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 ZNF211Q13398 564 aaPredicted RBP12.39□□□□□ -0.43
SKA3-203ENST00000400018 KYAT1Q16773 422 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 RTP2Q5QGT7 225 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 PAQR9Q6ZVX9 377 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 UBE2Q1Q7Z7E8 422 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 HACE1Q8IYU2 909 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 JOSD2Q8TAC2 188 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 RSPH1Q8WYR4 309 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 MARCH5Q9NX47 278 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 ADAM22Q9P0K1 906 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 E5RJQ4 531 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 KRT86O43790 486 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 SPATA31D3P0C874 917 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 TFE3P19532 575 aaPredicted RBP12.39□□□□□ -0.43
SKA3-203ENST00000400018 NSFP46459 744 aaKnown RBP12.39□□□□□ -0.43
SKA3-203ENST00000400018 NUMBP49757 651 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 PGFP49763 221 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 RAB27AP51159 221 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 MAP3K7CLP57077 242 aa12.39□□□□□ -0.43
SKA3-203ENST00000400018 OGDHQ02218 1023 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms