RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DPP10Q8N608 796 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 UBA3Q8TBC4 463 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ECSITQ9BQ95 431 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 THUMPD3Q9BV44 507 aaKnown RBP7.49□□□□□ -1.21
UPF2-203ENST00000397053 TMEM39BQ9GZU3 492 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CLPBQ9H078 707 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 ABCB6Q9NP58 842 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 PAK5Q9P286 719 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 MSRAQ9UJ68 235 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 TUBE1Q9UJT0 475 aa7.49□□□□□ -1.21
UPF2-203ENST00000397053 CDHR2Q9BYE9 1310 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 SNTNA6NMZ2 147 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 XYLBO75191 536 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 HLA-DRAP01903 254 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 GSTM1P09488 218 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CKBP12277 381 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 KDSRQ06136 332 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 PRR5LQ6MZQ0 368 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 RETSATQ6NUM9 610 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 ADCK1Q86TW2 530 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 OSCP1Q8WVF1 389 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 MOV10L1Q9BXT6 1211 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 ADAM33Q9BZ11 813 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 RSAD1Q9HA92 442 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 ABHD10Q9NUJ1 306 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CPA4Q9UI42 421 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 TMCC3Q9ULS5 477 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 RRP15Q9Y3B9 282 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 SLC12A8A0AV02 714 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 ESYT3A0FGR9 886 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CCDC189A1A4V9 331 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 M0QYT0 321 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 SRP72O76094 671 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 EIF2S1P05198 315 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 RHOCP08134 193 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 EPHX2P34913 555 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CSTF3Q12996 717 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 GOLGA7BQ2TAP0 167 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 XRRA1Q6P2D8 792 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 IYDQ6PHW0 289 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CACUL1Q86Y37 369 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 RNPC3Q96LT9 517 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 SCN3BQ9NY72 215 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 GON4LQ3T8J9 2241 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 MGAT4DA6NG13 374 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 AGRPO00253 132 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 BMP10O95393 424 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CTSEP14091 401 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 FGFR2P21802 821 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 TCF7P36402 384 aaPredicted RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 PDIA5Q14554 519 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 GSTA3Q16772 222 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 FAM83EQ2M2I3 478 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CACHD1Q5VU97 1274 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 DSG4Q86SJ6 1040 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 LINC00523Q86TU6 105 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 RPAINQ86UA6 219 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CLYBLQ8N0X4 340 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 CATSPER1Q8NEC5 780 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 SGF29Q96ES7 293 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 XPO6Q96QU8 1125 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 BBS2Q9BXC9 721 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 TRABDQ9H4I3 376 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 PCDHB2Q9Y5E7 798 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 METP08581 1390 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 GNG14A0A1W2PPG7 69 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 F9P00740 461 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 ENO2P09104 434 aaPredicted RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 CLTBP09497 229 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 GPD1P21695 349 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 JAK1P23458 1154 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 PLA2G4AP47712 749 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 EFEMP1Q12805 493 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 ARHGAP17Q68EM7 881 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 HHIPL2Q6UWX4 724 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 RFX8Q6ZV50 586 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 ENGASEQ8NFI3 743 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 ZSCAN18Q8TBC5 510 aaPredicted RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 GPT2Q8TD30 523 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 SLC20A1Q8WUM9 679 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 THAP11Q96EK4 314 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 WNK4Q96J92 1243 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 DNAJC1Q96KC8 554 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 MRPS26Q9BYN8 205 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 NLNQ9BYT8 704 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 KLHL28Q9NXS3 571 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 SOX13Q9UN79 622 aa7.48□□□□□ -1.21
UPF2-203ENST00000397053 NUP153P49790 1475 aaKnown RBP7.48□□□□□ -1.21
UPF2-203ENST00000397053 TEX28O15482 410 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 GAS2O43903 313 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 DHX34Q14147 1143 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 GPAT2Q6NUI2 795 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CYB5R4Q7L1T6 521 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 STAG2Q8N3U4 1231 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 MRPL48Q96GC5 212 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 ZNF512BQ96KM6 892 aaPredicted RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 RBM15Q96T37 977 aaKnown RBP eCLIP7.47□□□□□ -1.215e-10■■■■■ 33.7
UPF2-203ENST00000397053 TMEM117Q9H0C3 514 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 TRPC4Q9UBN4 977 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 MARCOQ9UEW3 520 aaPredicted RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms