RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 P4HA1P13674 534 aa16.93■□□□□ 0.3
PCDH1-203ENST00000394536 PDGFRAP16234 1089 aa16.93■□□□□ 0.3
PCDH1-203ENST00000394536 PPP1R2P3Q6NXS1 205 aa16.93■□□□□ 0.3
PCDH1-203ENST00000394536 PPIL6Q8IXY8 311 aa16.93■□□□□ 0.3
PCDH1-203ENST00000394536 LMO3Q8TAP4 145 aa16.93■□□□□ 0.3
PCDH1-203ENST00000394536 LRRN4Q8WUT4 740 aa16.93■□□□□ 0.3
PCDH1-203ENST00000394536 ATXN7L3BQ96GX2 97 aa16.93■□□□□ 0.3
PCDH1-203ENST00000394536 CAPN9O14815 690 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 NVLO15381 856 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 BGNP21810 368 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 FOXN2P32314 431 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 RAP1GAPP47736 663 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 STAT5BP51692 787 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 KLC1Q07866 573 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 MROH9Q5TGP6 573 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 TDRD10Q5VZ19 366 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 GADL1Q6ZQY3 521 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 ZCCHC9Q8N567 271 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 DEPDC1BQ8WUY9 529 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 PSPC1Q8WXF1 523 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 LPAR1Q92633 364 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 FOXP3Q9BZS1 431 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 IFT122Q9HBG6 1241 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 AVENQ9NQS1 362 aaPredicted RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 AKT3Q9Y243 479 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 VCPP55072 806 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 CCDC60Q8IWA6 550 aaPredicted RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 SREK1Q8WXA9 508 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 SEC14L1Q92503 715 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 MPHOSPH6Q99547 160 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 ZC3H7BQ9UGR2 993 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 NUB1Q9Y5A7 615 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 PYGBP11216 843 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 CDH8P55286 799 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 BNIP1Q12981 228 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 THOC5Q13769 683 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 PSMD6Q15008 389 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 AP1ARQ63HQ0 302 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 SAMD7Q7Z3H4 446 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 MRPL4Q9BYD3 311 aaKnown RBP16.92■□□□□ 0.3
PCDH1-203ENST00000394536 PCMTD2Q9NV79 361 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 IRS2Q9Y4H2 1338 aa16.92■□□□□ 0.3
PCDH1-203ENST00000394536 SPECC1L-ADORA2AF8WAN1 911 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 MYL2P10916 166 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 SERPINB3P29508 390 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 MORF4L2Q15014 288 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 SLC1A5Q15758 541 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 NFIL3Q16649 462 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 NXNQ6DKJ4 435 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 GLIS1Q8NBF1 620 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 TUBB6Q9BUF5 446 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 A1CFQ9NQ94 594 aaKnown RBP16.91■□□□□ 0.3
PCDH1-203ENST00000394536 BMPR2Q13873 1038 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 TFDP2Q14188 446 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 EFTUD2Q15029 972 aaKnown RBP eCLIP16.91■□□□□ 0.3
PCDH1-203ENST00000394536 TRIM50Q86XT4 487 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 FIZ1Q96SL8 496 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 TRIM4Q9C037 500 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 KLC2Q9H0B6 622 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 ADAM7Q9H2U9 754 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 GPATCH2LQ9NWQ4 482 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 MROH7Q68CQ1 1323 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 ATG16L1Q676U5 607 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 TRABD2AQ86V40 505 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 NSL1Q96IY1 281 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 NIF3L1Q9GZT8 377 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 ACAD9Q9H845 621 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 SMYD2Q9NRG4 433 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.91■□□□□ 0.3
PCDH1-203ENST00000394536 ASNSD1Q9NWL6 643 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 MYH7BA7E2Y1 1941 aa16.91■□□□□ 0.3
PCDH1-203ENST00000394536 UMODL1Q5DID0 1318 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 KRT38O76015 456 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 ZBTB41Q5SVQ8 909 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 CRELD2Q6UXH1 353 aaPredicted RBP16.9■□□□□ 0.3
PCDH1-203ENST00000394536 RTKN2Q8IZC4 609 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 TTC8Q8TAM2 541 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 DDX27Q96GQ7 796 aaKnown RBP16.9■□□□□ 0.3
PCDH1-203ENST00000394536 EPB41L4BQ9H329 900 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 C17orf75Q9HAS0 396 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 LOC100653049A0A140TA62 436 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 LIASO43766 372 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 KRT34O76011 436 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 PRKCBP05771 671 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 ELK3P41970 407 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 WDR4P57081 412 aaKnown RBP16.9■□□□□ 0.3
PCDH1-203ENST00000394536 SGSM1Q2NKQ1 1148 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 UBIAD1Q9Y5Z9 338 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 ZC3H11AO75152 810 aaKnown RBP eCLIP16.9■□□□□ 0.3
PCDH1-203ENST00000394536 UBTFL6P0CB48 400 aaPredicted RBP16.9■□□□□ 0.3
PCDH1-203ENST00000394536 RFC1P35251 1148 aaPredicted RBP16.9■□□□□ 0.3
PCDH1-203ENST00000394536 SESN2P58004 480 aaPredicted RBP16.9■□□□□ 0.3
PCDH1-203ENST00000394536 NOMO3P69849 1222 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 SULF1Q8IWU6 871 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 KATNAL2Q8IYT4 538 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 PRPF31Q8WWY3 499 aaKnown RBP16.9■□□□□ 0.3
PCDH1-203ENST00000394536 TMEM109Q9BVC6 243 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 SLC12A4Q9UP95 1085 aa16.9■□□□□ 0.3
PCDH1-203ENST00000394536 LMNAP02545 664 aaKnown RBP16.89■□□□□ 0.29
PCDH1-203ENST00000394536 TCF4P15884 667 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms