RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 KLHL41O60662 606 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 CLASP2O75122 1294 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 KRT6BP04259 564 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 S100A9P06702 114 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 PTPN7P35236 360 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 QARSP47897 775 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 KRT6CP48668 564 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 PEX5P50542 639 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 ROR2Q01974 943 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 ZNF235Q14590 738 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 GRM4Q14833 912 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 ZNF618Q5T7W0 954 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 PAPD7Q5XG87 772 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 FAM160B2Q86V87 743 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 TADA1Q96BN2 335 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 SLC10A4Q96EP9 437 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 CDC42EP4Q9H3Q1 356 aaKnown RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 VTA1Q9NP79 307 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 SELENONQ9NZV5 590 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 PKP3Q9Y446 797 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 CAPN6Q9Y6Q1 641 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 MEI4A8MW99 385 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 PSMD3O43242 534 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 BGNP21810 368 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 FNTAP49354 379 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 DUOXA2Q1HG44 320 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 TRIQKQ629K1 86 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 CENPLQ8N0S6 344 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-202ENST00000394243 BEST2Q8NFU1 509 aa12.32□□□□□ -0.44
SYNPO-202ENST00000394243 PDGFRAP16234 1089 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 SULT1E1P49888 294 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 IL5RAQ01344 420 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 COX10Q12887 443 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 RNF219Q5W0B1 726 aaPredicted RBP12.31□□□□□ -0.44
SYNPO-202ENST00000394243 HAUS6Q7Z4H7 955 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 POLR3FQ9H1D9 316 aaPredicted RBP12.31□□□□□ -0.44
SYNPO-202ENST00000394243 LRFN2Q9ULH4 789 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 LSM1O15116 133 aaKnown RBP12.31□□□□□ -0.44
SYNPO-202ENST00000394243 PEX1O43933 1283 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 CNOT3O75175 753 aaKnown RBP12.31□□□□□ -0.44
SYNPO-202ENST00000394243 NDUFS3O75489 264 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 RAG1P15918 1043 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 HSD17B4P51659 736 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 STOX1Q6ZVD7 989 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 TMPRSS6Q8IU80 811 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 GANCQ8TET4 914 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 MROH7Q68CQ1 1323 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 P4HBP07237 508 aaKnown RBP12.31□□□□□ -0.44
SYNPO-202ENST00000394243 NCF4Q15080 339 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 FAM45BPQ6NSW5 357 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 USP49Q70CQ1 688 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 DCAF4Q8WV16 495 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 AFG1LQ8WV93 481 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 ASAP1Q9ULH1 1129 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 FAM25AB3EWG3 89 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 FAM25CB3EWG5 89 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 FAM25GB3EWG6 89 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 GLI1P08151 1106 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 C11orf88Q6PI97 169 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 RTL3Q8N8U3 475 aaKnown RBP12.31□□□□□ -0.44
SYNPO-202ENST00000394243 UXS1Q8NBZ7 420 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 GORASP1Q9BQQ3 440 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 AP5M1Q9H0R1 490 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 MRPL39Q9NYK5 338 aaKnown RBP12.31□□□□□ -0.44
SYNPO-202ENST00000394243 SHANK2Q9UPX8 1470 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 RGS2P41220 211 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 PPP3CCP48454 512 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 MIER2Q8N344 545 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 ZNF668Q96K58 619 aaPredicted RBP12.31□□□□□ -0.44
SYNPO-202ENST00000394243 GCNAQ96QF7 691 aa12.31□□□□□ -0.44
SYNPO-202ENST00000394243 GLRA3O75311 464 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 RBP3P10745 1247 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 AVPR1AP37288 418 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 TBCELQ5QJ74 424 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 IL31Q6EBC2 164 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 OTOAQ7RTW8 1153 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 ENKURQ8TC29 256 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 WHRNQ9P202 907 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 PPP1R3GB7ZBB8 358 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 TNFRSF21O75509 655 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 PRLRP16471 622 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 SOAT1P35610 550 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 TMEM63BQ5T3F8 832 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 AGAP11Q8TF27 550 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 ATG4AQ8WYN0 398 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 MTA3Q9BTC8 594 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 KRT84Q9NSB2 600 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 KANSL1LA0AUZ9 987 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 EXOSC10Q01780 885 aaKnown RBP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 PCSK7Q16549 785 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 NFIL3Q16649 462 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 DGUOKQ16854 277 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 RGS21Q2M5E4 152 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 TSGA10IPQ3SY00 556 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 GIMAP8Q8ND71 665 aaPredicted RBP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 ZNF669Q96BR6 464 aaPredicted RBP12.3□□□□□ -0.44
SYNPO-202ENST00000394243 PIF1Q9H611 641 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 HMG20AQ9NP66 347 aa12.3□□□□□ -0.44
SYNPO-202ENST00000394243 CTNNAL1Q9UBT7 734 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms