RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 MAGEA4P43358 317 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 OR1G1P47890 313 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF280CQ8ND82 737 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 TRIM51Q9BSJ1 452 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 BBS2Q9BXC9 721 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 FRMD8P1Q9BZ68 369 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 FAM200BP0CF97 657 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 AKR1B1P15121 316 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 TCN1P20061 433 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 ETFBP38117 255 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 TRPM8Q7Z2W7 1104 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 C4orf33Q8N1A6 199 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 NSL1Q96IY1 281 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 IGSF9BQ9UPX0 1349 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 RRN3P2A6NIE6 340 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 NCAM1P13591 858 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 GEMIN4P57678 1058 aaKnown RBP13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 CYP4Z1Q86W10 505 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 FAM9CQ8IZT9 166 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 KCTD17Q8N5Z5 321 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 TERB1Q8NA31 727 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 PRMT7Q9NVM4 692 aaPredicted RBP13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 RPS6KB2Q9UBS0 482 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 RNF112Q9ULX5 631 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 PTGER2P43116 358 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 IL17RAQ96F46 866 aa13.31□□□□□ -0.28
CCDC88C-204ENST00000389857 H7C4K7 107 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 EIF3HO15372 352 aaKnown RBP eCLIP13.3□□□□□ -0.282e-6■■■■■ 27.8
CCDC88C-204ENST00000389857 C6orf222P0C671 652 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 CDH18Q13634 790 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 CHI3L2Q15782 390 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 CELF1Q92879 486 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 E2F7Q96AV8 911 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 SEC16BQ96JE7 1060 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 GGT7Q9UJ14 662 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 SLC39A10Q9ULF5 831 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 PAIP2BQ9ULR5 123 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 PCDHB2Q9Y5E7 798 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 UCHL3P15374 230 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 HDDC2Q7Z4H3 204 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 UNC45BQ8IWX7 931 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 OSBPL8Q9BZF1 889 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 FBXO2Q9UK22 296 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 MAP3K4Q9Y6R4 1608 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 SLC25A27O95847 323 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 TAF1CQ15572 869 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 USP39Q53GS9 565 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 CHSY1Q86X52 802 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 SIRT2Q8IXJ6 389 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 CCT8L2Q96SF2 557 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 TRIM9Q9C026 710 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 COPS7BQ9H9Q2 264 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 METTL5Q9NRN9 209 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 PDS5AQ29RF7 1337 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 P4HA2O15460 535 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 BRD2P25440 801 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 PTPN7P35236 360 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 SLC11A2P49281 568 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 TRIP10Q15642 601 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 CENPLQ8N0S6 344 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 A0A1W2PQJ5 194 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 MUTP22033 750 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 STX5Q13190 355 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 KYNUQ16719 465 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 C16orf62Q7Z3J2 963 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 MOV10L1Q9BXT6 1211 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 ERAP1Q9NZ08 941 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 CCDC81Q6ZN84 652 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 RASGRP2Q7LDG7 609 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 MICU2Q8IYU8 434 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 ST13P5Q8NFI4 369 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 DCDC2Q9UHG0 476 aa13.3□□□□□ -0.28
CCDC88C-204ENST00000389857 DDHD2O94830 711 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 CLEC16AQ2KHT3 1053 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 TTC33Q6PID6 262 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 SRBD1Q8N5C6 995 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 SCUBE2Q9NQ36 999 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 NAGPAQ9UK23 515 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 ROBO2Q9HCK4 1378 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 FYNP06241 537 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 PSMD7P51665 324 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF177Q13360 481 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 LAMC2Q13753 1193 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 PLA2G4FQ68DD2 849 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 ZNF544Q6NX49 715 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 EFCAB12Q6NXP0 572 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 CCDC103Q8IW40 242 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 FEZF2Q8TBJ5 459 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 DNAJC9Q8WXX5 260 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 PPP1R14AQ96A00 147 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 MTERF3Q96E29 417 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 RAD18Q9NS91 495 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 ADAM30Q9UKF2 790 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 A2ML1A8K2U0 1454 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 A0A1B0GTH6 734 aa13.29□□□□□ -0.28
CCDC88C-204ENST00000389857 DYNC1LI2O43237 492 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms