RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LILRA4P59901 499 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 TMEM86AQ8N2M4 240 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 UBL4BQ8N7F7 174 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 GOLGA6L1Q8N7Z2 621 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 ANKLE1Q8NAG6 615 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 URGCPQ8TCY9 931 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 RSPH1Q8WYR4 309 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 TOX2Q96NM4 488 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 C11orf70Q9BRQ4 267 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 WDR35Q9P2L0 1181 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 HESX1Q9UBX0 185 aa19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.27■□□□□ 0.68
CCDC88C-203ENST00000389856 A8MXQ7 604 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 PPEF2O14830 753 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 INPPL1O15357 1258 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 SETSIPP0DME0 302 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 SOX4Q06945 474 aaPredicted RBP19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 LCLAT1Q6UWP7 414 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 MMS22LQ6ZRQ5 1243 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 ANKRD33Q7Z3H0 272 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 NT5DC3Q86UY8 548 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 SPATA18Q8TC71 538 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 TFAP2BQ92481 460 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 LPPQ93052 612 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 SYNCQ9H7C4 482 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 RBM12Q9NTZ6 932 aaKnown RBP19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 KANSL3Q9P2N6 904 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 TMEM59LQ9UK28 342 aa19.26■□□□□ 0.67
CCDC88C-203ENST00000389856 CCDC188H7C350 402 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 MYO1FO00160 1098 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 PODXLO00592 558 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 PQBP1O60828 265 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 WARSP23381 471 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 RRM1P23921 792 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 GNL1P36915 607 aaPredicted RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 SLC1A1P43005 524 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 SCNN1GP51170 649 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 TUSC3Q13454 348 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 SOWAHAQ2M3V2 549 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 C1orf53Q5VUE5 145 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 ALS2CLQ60I27 953 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 ZNF598Q86UK7 904 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 ADGRF2Q8IZF7 708 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 C1orf131Q8NDD1 294 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 IPO4Q8TEX9 1081 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 ZNF333Q96JL9 665 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 MRPL45Q9BRJ2 306 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 GDF3Q9NR23 364 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 ADAM21Q9UKJ8 722 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 TTC7AQ9ULT0 858 aaPredicted RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 COG5Q9UP83 839 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 TDRD15B5MCY1 1934 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 C9IYK1 514 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 M0QYV0 167 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 O00370 1275 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 FAM189BP81408 668 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 PPP2R5EQ16537 467 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 PLEKHA7Q6IQ23 1121 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 DNAJC24Q6P3W2 148 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 SLC39A5Q6ZMH5 540 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 LIMS2Q7Z4I7 341 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 GSTCDQ8NEC7 633 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 ARMC5Q96C12 935 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 HES6Q96HZ4 224 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 TWNKQ96RR1 684 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 WNT8AQ9H1J5 351 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 ELAC1Q9H777 363 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 GOLGA2P5Q9HBQ8 144 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 DMGDHQ9UI17 866 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 ANAPC7Q9UJX3 599 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 STXBP5LQ9Y2K9 1186 aa19.25■□□□□ 0.67
CCDC88C-203ENST00000389856 PGRMC1O00264 195 aaKnown RBP19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 CYB561D2O14569 222 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 KCNK3O14649 394 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 ATMINO43313 823 aaPredicted RBP19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 HOXA2O43364 376 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 SPOPO43791 374 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 MICAL2O94851 1124 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 LHX1P48742 406 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 MESDQ14696 234 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 MBTPS1Q14703 1052 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 ARHGAP17Q68EM7 881 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 DENND1BQ6P3S1 775 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 DSTYKQ6XUX3 929 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 CRYBG2Q8N1P7 616 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 RASGEF1CQ8N431 466 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 PKNOX2Q96KN3 472 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 PSMB7Q99436 277 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 ZSWIM1Q9BR11 485 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 PLVAPQ9BX97 442 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 TMEM161AQ9NX61 479 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 HMGXB4Q9UGU5 601 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 ALG6Q9Y672 507 aa19.24■□□□□ 0.67
CCDC88C-203ENST00000389856 MEIS3P2A8K0S8 358 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 CFHP08603 1231 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 SLC8A3P57103 927 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 PLEKHG4Q58EX7 1191 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 TMEM130Q8N3G9 435 aa19.23■□□□□ 0.67
CCDC88C-203ENST00000389856 C18orf8Q96DM3 657 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 422.1 ms