RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 VPS52Q8N1B4 723 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 MRPL43Q8N983 215 aaKnown RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 CXorf38Q8TB03 319 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 POF1BQ8WVV4 589 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 HNRNPLLQ8WVV9 542 aaKnown RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 OSBPL9Q96SU4 736 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 CDCA3Q99618 268 aaPredicted RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 HERC2P3Q9BVR0 1158 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 PACSIN1Q9BY11 444 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 MTMR12Q9C0I1 747 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 MRPL17Q9NRX2 175 aaKnown RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 MTMR10Q9NXD2 777 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 GDAP2Q9NXN4 497 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 HCSTQ9UBK5 93 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 APEX2Q9UBZ4 518 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 DNAJC12Q9UKB3 198 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 MTUS1Q9ULD2 1270 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 PCDHGC5Q9Y5F6 944 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 FNDC1Q4ZHG4 1894 aaPredicted RBP10.87□□□□□ -0.67
VPS53-202ENST00000389040 ATP8B3O60423 1300 aa10.87□□□□□ -0.67
VPS53-202ENST00000389040 KPNA7A9QM74 516 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 PDE2AO00408 941 aaPredicted RBP10.86□□□□□ -0.67
VPS53-202ENST00000389040 FSCN2O14926 492 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 GFPT2O94808 682 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 P4HA1P13674 534 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 TYMPP19971 482 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 DLG4P78352 724 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 DSG1Q02413 1049 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 KIAA1841Q6NSI8 718 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ANKS3Q6ZW76 656 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 SV2AQ7L0J3 742 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 TMC7Q7Z402 723 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 COG1Q8WTW3 980 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 PAAF1Q9BRP4 392 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 TTPALQ9BTX7 342 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 IMPG2Q9BZV3 1241 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ZBP1Q9H171 429 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ALG13Q9NP73 1137 aaKnown RBP10.86□□□□□ -0.67
VPS53-202ENST00000389040 FNIP2Q9P278 1114 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 DPP7Q9UHL4 492 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 NAGPAQ9UK23 515 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 NENFQ9UMX5 172 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 COQ4Q9Y3A0 265 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 PTPRSQ13332 1948 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 CHD9Q3L8U1 2897 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 NT5C1B-RDH14C9J2C7 533 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 H7C4K7 107 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 GRM6O15303 877 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 PHACTR2O75167 634 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ERLIN1O75477 346 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 PALMO75781 387 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ITGB3P05106 788 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 CYP11A1P05108 521 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 URODP06132 367 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ODC1P11926 461 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 FGFR3P22607 806 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 GLUD2P49448 558 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 WNT7BP56706 349 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 DRAP1Q14919 205 aaPredicted RBP10.86□□□□□ -0.67
VPS53-202ENST00000389040 LONRF2Q1L5Z9 754 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 KIAA0319Q5VV43 1072 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 WDR93Q6P2C0 686 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ALKBH5Q6P6C2 394 aaKnown RBP10.86□□□□□ -0.67
VPS53-202ENST00000389040 CD300LGQ6UXG3 332 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 RTL10Q7L3V2 364 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ZNF572Q7Z3I7 529 aaPredicted RBP10.86□□□□□ -0.67
VPS53-202ENST00000389040 TMEM173Q86WV6 379 aaPredicted RBP10.86□□□□□ -0.67
VPS53-202ENST00000389040 TMEM86AQ8N2M4 240 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 OR5B17Q8NGF7 314 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 PIK3R5Q8WYR1 880 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 ZNF516Q92618 1163 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 POP1Q99575 1024 aaKnown RBP10.86□□□□□ -0.67
VPS53-202ENST00000389040 TCF25Q9BQ70 676 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 TLR10Q9BXR5 811 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 EMILIN2Q9BXX0 1053 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 GPR62Q9BZJ7 368 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 GPR88Q9GZN0 384 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 CERS4Q9HA82 394 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 GOLGA2P5Q9HBQ8 144 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 SIX4Q9UIU6 781 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 MAFFQ9ULX9 164 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 PCDHB8Q9UN66 801 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 AGAP1Q9UPQ3 857 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 BACE2Q9Y5Z0 518 aa10.86□□□□□ -0.67
VPS53-202ENST00000389040 LILRB3O75022 631 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 SASH3O75995 380 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 OAZ2O95190 189 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 CCDC172P0C7W6 258 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 POLR2BP30876 1174 aaKnown RBP10.85□□□□□ -0.67
VPS53-202ENST00000389040 PBX3P40426 434 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 VSNL1P62760 191 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 ITIH3Q06033 890 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 PPP3CAQ08209 521 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 NCOA4Q13772 614 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 CAMK1Q14012 370 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 C1orf220Q5T0J3 134 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 FAM171A1Q5VUB5 890 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 HS6ST3Q8IZP7 471 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 TTC39CQ8N584 583 aa10.85□□□□□ -0.67
VPS53-202ENST00000389040 TOP6BLQ8N6T0 577 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms