RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 SLFN11Q7Z7L1 901 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 DAAM2Q86T65 1068 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 ERICH1Q86X53 443 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 COLGALT2Q8IYK4 626 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 TNS4Q8IZW8 715 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 CRIPAKQ8N1N5 446 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 TNIP3Q96KP6 325 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 CASD1Q96PB1 797 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 TUBB2BQ9BVA1 445 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 FAM49BQ9NUQ9 324 aa19.8■□□□□ 0.76
CLN3-204ENST00000357857 TRIM43BA6NCK2 446 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 BRCC3P46736 316 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 LHX1P48742 406 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 GATMP50440 423 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 HASPINQ8TF76 798 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 TRIM43Q96BQ3 446 aaPredicted RBP19.79■□□□□ 0.76
CLN3-204ENST00000357857 CDC23Q9UJX2 597 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 NCK2O43639 380 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 KIF4AO95239 1232 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 MEI1Q5TIA1 1274 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 PHLDB2Q86SQ0 1253 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 MSANTD4Q8NCY6 345 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 UBA3Q8TBC4 463 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 SPATA18Q8TC71 538 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 RSPH1Q8WYR4 309 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 VWCEQ96DN2 955 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 LPIN3Q9BQK8 851 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 TLR10Q9BXR5 811 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 GOLPH3Q9H4A6 298 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 DDX43Q9NXZ2 648 aaKnown RBP19.79■□□□□ 0.76
CLN3-204ENST00000357857 CYTH4Q9UIA0 394 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 TIMM13Q9Y5L4 95 aaPredicted RBP19.79■□□□□ 0.76
CLN3-204ENST00000357857 SAR1BQ9Y6B6 198 aa19.79■□□□□ 0.76
CLN3-204ENST00000357857 ARHGEF37A1IGU5 675 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 TMEM189-UBE2V1I3L0A0 370 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 I3L4J1 428 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 M0QZQ0 153 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 RAG1P15918 1043 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 ITGB8P26012 769 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 GPD2P43304 727 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 OR1G1P47890 313 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 C11orf63Q6NUN7 778 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 METTL23Q86XA0 190 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 B3GALNT2Q8NCR0 500 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 SUSD3Q96L08 255 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 HESX1Q9UBX0 185 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 DSEQ9UL01 958 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 SNX12Q9UMY4 172 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 SCINQ9Y6U3 715 aa19.78■□□□□ 0.76
CLN3-204ENST00000357857 CYP11A1P05108 521 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 ITGB1P05556 798 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 EN2P19622 333 aaPredicted RBP19.77■□□□□ 0.76
CLN3-204ENST00000357857 PTPN20Q4JDL3 420 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 PLEKHA7Q6IQ23 1121 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 LLGL2Q6P1M3 1020 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.77■□□□□ 0.76
CLN3-204ENST00000357857 PEX26Q7Z412 305 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 MRPL9Q9BYD2 267 aaKnown RBP19.77■□□□□ 0.76
CLN3-204ENST00000357857 MRPL47Q9HD33 250 aaKnown RBP19.77■□□□□ 0.76
CLN3-204ENST00000357857 ABCB6Q9NP58 842 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 DNAJB4Q9UDY4 337 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 AMFRQ9UKV5 643 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 STRIP2Q9ULQ0 834 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 HYOU1Q9Y4L1 999 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 ALPK3Q96L96 1907 aa19.77■□□□□ 0.76
CLN3-204ENST00000357857 F8W810 466 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 CCDC130P13994 396 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 PRLRP16471 622 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 PTPN1P18031 435 aaKnown RBP19.76■□□□□ 0.75
CLN3-204ENST00000357857 ACAT1P24752 427 aaKnown RBP19.76■□□□□ 0.75
CLN3-204ENST00000357857 PSMC1P62191 440 aaKnown RBP19.76■□□□□ 0.75
CLN3-204ENST00000357857 PDCLQ13371 301 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 PKDCCQ504Y2 493 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 UBE2Q1Q7Z7E8 422 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 NT5DC3Q86UY8 548 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 TTC30AQ86WT1 665 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 NRDE2Q9H7Z3 1164 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 PARVAQ9NVD7 372 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 ABHD14A-ACY1A0A1B0GW23 586 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 TBKBP1A7MCY6 615 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 TMEM110-MUSTN1A8MSY1 372 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 ATP2C2O75185 946 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 PFKMP08237 780 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 SETSIPP0DME0 302 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 CSF2RAP15509 400 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 ADORA2BP29275 332 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 MAMLD1Q13495 774 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 MESDQ14696 234 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 RPS6KA1Q15418 735 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 CYP4A22Q5TCH4 519 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 MFSD5Q6N075 450 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 TMEM199Q8N511 208 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 MYRIPQ8NFW9 859 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 C18orf8Q96DM3 657 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 CPXM1Q96SM3 734 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 SYT15Q9BQS2 421 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 SYNCQ9H7C4 482 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 ANAPC7Q9UJX3 599 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 PCDHB8Q9UN66 801 aa19.76■□□□□ 0.75
CLN3-204ENST00000357857 PACSIN2Q9UNF0 486 aaPredicted RBP19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms