RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 DUX4L4P0CJ87 422 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 DUX4L5P0CJ88 424 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 DUX4L6P0CJ89 424 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 DUX4L7P0CJ90 424 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 PSMA4P25789 261 aaKnown RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 FDFT1P37268 417 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 RPS6P62753 249 aaKnown RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 MTFR1Q15390 333 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 HORMAD1Q86X24 394 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 SPATA2LQ8IUW3 424 aaPredicted RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 ANKZF1Q9H8Y5 726 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 JMJD4Q9H9V9 463 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 DUX4Q9UBX2 424 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 CHORDC1Q9UHD1 332 aaPredicted RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 H2AFYO75367 372 aaKnown RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 BLVRAP53004 296 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 CCNJLQ8IV13 435 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 ZNF786Q8N393 782 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 SEPT1Q8WYJ6 367 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 EFCAB1Q9HAE3 211 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 SPDYE5A6NIY4 337 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 TNPO2O14787 897 aaKnown RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 PDE5AO76074 875 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 GRIK1P39086 918 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 BAATQ14032 418 aaPredicted RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 FAM83EQ2M2I3 478 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 SPDYE7PQ495Y7 208 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 PABPC5Q96DU9 382 aaKnown RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 MXRA8Q9BRK3 442 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 LACRTQ9GZZ8 138 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 LATS2Q9NRM7 1088 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 METTL5Q9NRN9 209 aaKnown RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 USP1O94782 785 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 EFHC1Q5JVL4 640 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 TTI2Q6NXR4 508 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 ANKS3Q6ZW76 656 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 ANKEF1Q9NU02 776 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 PIM2Q9P1W9 311 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 APPL1Q9UKG1 709 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 PIN4Q9Y237 131 aaKnown RBP15.45■□□□□ 0.06
CHD4-201ENST00000357008 PKP3Q9Y446 797 aa15.45■□□□□ 0.06
CHD4-201ENST00000357008 STRNO43815 780 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 TXNP10599 105 aaKnown RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 CACNB2Q08289 660 aaPredicted RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 VPS50Q96JG6 964 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 PI4K2AQ9BTU6 479 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 MPP6Q9NZW5 540 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 A0A0A6YYK5 440 aaPredicted RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 RGS4P49798 205 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 MAP3K7CLP57077 242 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 SF3B3Q15393 1217 aaKnown RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 MEI1Q5TIA1 1274 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 BBS7Q8IWZ6 715 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 FBXO25Q8TCJ0 367 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 FAR2Q96K12 515 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 CDC42EP4Q9H3Q1 356 aaKnown RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 EVPLLA8MZ36 301 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 FOXN3O00409 490 aaPredicted RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 NFIBO00712 420 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 NR3C2P08235 984 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 PLA2G4FQ68DD2 849 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 PKN3Q6P5Z2 889 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 LINC00523Q86TU6 105 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 RAB42Q8N4Z0 105 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 PHF21AQ96BD5 680 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 CD4P01730 458 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 OCM2P0CE71 109 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 OCMP0CE72 109 aaPredicted RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 PSMC3P17980 439 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 SOX11P35716 441 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 LRRC74AQ0VAA2 488 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 SNRNP27Q8WVK2 155 aaKnown RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 SHCBP1LQ9BZQ2 653 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 SMARCAD1Q9H4L7 1026 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 CATSPERBQ9H7T0 1116 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 RXFP1Q9HBX9 757 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 GOLGA8TH3BQL2 631 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 UBOX5O94941 541 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 ZCCHC18P0CG32 403 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 PTPN4P29074 926 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 VEPH1Q14D04 833 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 CDKAL1Q5VV42 579 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 PLEKHM3Q6ZWE6 761 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 FBXO36Q8NEA4 188 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 IPMKQ8NFU5 416 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 TEX13BQ9BXU2 312 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.44■□□□□ 0.06
CHD4-201ENST00000357008 GEMIN8Q9NWZ8 242 aaKnown RBP15.44■□□□□ 0.06
CHD4-201ENST00000357008 RHBDL2Q9NX52 303 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.44■□□□□ 0.064e-10■■□□□ 11.5
CHD4-201ENST00000357008 HECW2Q9P2P5 1572 aa15.44■□□□□ 0.06
CHD4-201ENST00000357008 PRR23D1E9PI22 279 aaPredicted RBP15.43■□□□□ 0.06
CHD4-201ENST00000357008 PRR23D2P0DMB1 279 aaPredicted RBP15.43■□□□□ 0.06
CHD4-201ENST00000357008 CYP11B2P19099 503 aa15.43■□□□□ 0.06
CHD4-201ENST00000357008 PRKCEQ02156 737 aa15.43■□□□□ 0.06
CHD4-201ENST00000357008 GRB10Q13322 594 aa15.43■□□□□ 0.06
CHD4-201ENST00000357008 COG2Q14746 738 aa15.43■□□□□ 0.06
CHD4-201ENST00000357008 CENPPQ6IPU0 288 aa15.43■□□□□ 0.06
CHD4-201ENST00000357008 ATP8B4Q8TF62 1192 aa15.43■□□□□ 0.06
CHD4-201ENST00000357008 MAP3K20Q9NYL2 800 aaKnown RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms