RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 HMGB1P1B2RPK0 211 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 OGTO15294 1046 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 TRIM21P19474 475 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 HNRNPH3P31942 346 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 MSH2P43246 934 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 EXOC3L4Q17RC7 722 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 KIZQ2M2Z5 673 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 MUM1Q2TAK8 710 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 GLE1Q53GS7 698 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 C15orf39Q6ZRI6 1047 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 RFX8Q6ZV50 586 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 DNAAF5Q86Y56 855 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 BAP1Q92560 729 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 CHMP6Q96FZ7 201 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 TMEM237Q96Q45 408 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 FAM49AQ9H0Q0 323 aaPredicted RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 PDZD7Q9H5P4 517 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 ETNK2Q9NVF9 386 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 CPSF3Q9UKF6 684 aaKnown RBP10.69□□□□□ -0.7
SYNE1-203ENST00000354674 COQ4Q9Y3A0 265 aa10.69□□□□□ -0.7
SYNE1-203ENST00000354674 LUC7L3O95232 432 aaKnown RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 MMEP08473 750 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 ARF4P18085 180 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 CCND1P24385 295 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 CRYBB1P53674 252 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 RCN2Q14257 317 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 EPC2Q52LR7 807 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 ZBTB41Q5SVQ8 909 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 EEF1DP3Q658K8 133 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 SDCCAG8Q86SQ7 713 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 ZC3H18Q86VM9 953 aaKnown RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 SH3TC2Q8TF17 1288 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 PHF12Q96QT6 1004 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 CEP72Q9P209 647 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 ANKFY1Q9P2R3 1169 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 SLC12A6Q9UHW9 1150 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 INTUQ9ULD6 942 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 DAAM1Q9Y4D1 1078 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 A6NNZ2 444 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 MCF2P10911 925 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 CHN1P15882 459 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 SLC9A1P19634 815 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 HOXA11P31270 313 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 WNT7BP56706 349 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 NCALDP61601 193 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 ITGA7Q13683 1181 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 MEA1Q16626 185 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 TUBB8Q3ZCM7 444 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 KLHDC7AQ5VTJ3 777 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 WDR59Q6PJI9 974 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 RINLQ6ZS11 566 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 USP37Q86T82 979 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 BRSK2Q8IWQ3 736 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 DDX27Q96GQ7 796 aaKnown RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 XPO6Q96QU8 1125 aaKnown RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 PPP1R16BQ96T49 567 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 LSM14BQ9BX40 385 aaKnown RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 TMEM117Q9H0C3 514 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 CDT1Q9H211 546 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 MMRN2Q9H8L6 949 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 NHEJ1Q9H9Q4 299 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 TMBIM4Q9HC24 238 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 SAMD15Q9P1V8 674 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 PHF24Q9UPV7 400 aa10.68□□□□□ -0.7
SYNE1-203ENST00000354674 TDRKHQ9Y2W6 561 aaKnown RBP10.68□□□□□ -0.7
SYNE1-203ENST00000354674 CSDE1O75534 798 aaKnown RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF24P17028 368 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ACOT2P49753 483 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 KLC1Q07866 573 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF844Q08AG5 666 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 MGAT3Q09327 533 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 SNX17Q15036 470 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ARFGAP2Q8N6H7 521 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ARRDC4Q8NCT1 418 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 WNT8BQ93098 351 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 AP1M1Q9BXS5 423 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 UNC93B1Q9H1C4 597 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 DPH5Q9H2P9 285 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 TMEM8AQ9HCN3 771 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 FAM207AQ9NSI2 230 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 AXLP30530 894 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 MYL7Q01449 175 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 LACTB2Q53H82 288 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 OLFML1Q6UWY5 402 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 TTC8Q8TAM2 541 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 TMEM40Q8WWA1 233 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF516Q92618 1163 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 OSMRQ99650 979 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 RBAKQ9NYW8 714 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 GCNT4Q9P109 453 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 DESP17661 470 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 TNFSF9P41273 254 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 MRPS6P82932 125 aaKnown RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 CDK17Q00537 523 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 KYAT1Q16773 422 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 TRIM71Q2Q1W2 868 aaKnown RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF568Q3ZCX4 644 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ADAT2Q7Z6V5 191 aaKnown RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 ZBTB33Q86T24 672 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms