RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ZNF410Q86VK4 478 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 IPMKQ8NFU5 416 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 COG1Q8WTW3 980 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 PBXIP1Q96AQ6 731 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 UBIAD1Q9Y5Z9 338 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 SARSP49591 514 aaKnown RBP15.58■□□□□ 0.08
COL17A1-201ENST00000353479 STAT4Q14765 748 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 FIGNQ5HY92 759 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 TBC1D1Q86TI0 1168 aaPredicted RBP15.58■□□□□ 0.08
COL17A1-201ENST00000353479 CYTH2Q99418 400 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 CYP3A43Q9HB55 503 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 DUSP10Q9Y6W6 482 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 AP3B1O00203 1094 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 RAG1P15918 1043 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 RAB27AP51159 221 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 CXCL17Q6UXB2 119 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 NUDCD3Q8IVD9 361 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 DCUN1D1Q96GG9 259 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 ATP6V1G3Q96LB4 118 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 TMEM39AQ9NV64 488 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 PCDHB8Q9UN66 801 aa15.58■□□□□ 0.08
COL17A1-201ENST00000353479 APOBEC2Q9Y235 224 aaKnown RBP15.58■□□□□ 0.08
COL17A1-201ENST00000353479 GOLGA8RI6L899 631 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 TRIM68Q6AZZ1 485 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 ZNF571Q7Z3V5 609 aaPredicted RBP15.57■□□□□ 0.08
COL17A1-201ENST00000353479 ZSWIM1Q9BR11 485 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 TUBB6Q9BUF5 446 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 INTS13Q9NVM9 706 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 DDX43Q9NXZ2 648 aaKnown RBP15.57■□□□□ 0.08
COL17A1-201ENST00000353479 SUN2Q9UH99 717 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 BCL9LQ86UU0 1499 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 PARP4Q9UKK3 1724 aaKnown RBP15.57■□□□□ 0.08
COL17A1-201ENST00000353479 SLC15A5A6NIM6 579 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 ZPBP2Q6X784 338 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 RPRD1AQ96P16 312 aaPredicted RBP15.57■□□□□ 0.08
COL17A1-201ENST00000353479 CHMP2BQ9UQN3 213 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 LACTBL1A8MY62 500 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 GNGT2O14610 69 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 ASMTLO95671 621 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 RRM1P23921 792 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 ZNF280DQ6N043 979 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 ANGPTL8Q6UXH0 198 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 WNK4Q96J92 1243 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 TRPV2Q9Y5S1 764 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 NALCNQ8IZF0 1738 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 ANKRD63C9JTQ0 380 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 HADHAP40939 763 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 IMPG1Q17R60 797 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 BEND6Q5SZJ8 279 aaPredicted RBP15.57■□□□□ 0.08
COL17A1-201ENST00000353479 SH3KBP1Q96B97 665 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 CAMKK2Q96RR4 588 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 ZBTB18Q99592 522 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 FUCA2Q9BTY2 467 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 TISP43B9A030 160 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 H0Y626 953 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 PGK1P00558 417 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 SLC2A3P11169 496 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 SLC11A2P49281 568 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 CENPCQ03188 943 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 E2F4Q16254 413 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 BTNL9Q6UXG8 535 aa15.57■□□□□ 0.08
COL17A1-201ENST00000353479 DDX27Q96GQ7 796 aaKnown RBP15.57■□□□□ 0.08
COL17A1-201ENST00000353479 AKAP12Q02952 1782 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 GLTPD2A6NH11 291 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 FOXP2O15409 715 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 MAP3K6O95382 1288 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 ESRRBO95718 433 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 ACAT1P24752 427 aaKnown RBP15.56■□□□□ 0.08
COL17A1-201ENST00000353479 CDH18Q13634 790 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 ACAD11Q709F0 780 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 PGBD3Q8N328 593 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 FAM172AQ8WUF8 416 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 ZNF518BQ9C0D4 1074 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 DCTN4Q9UJW0 460 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 GTPBP10A4D1E9 387 aaKnown RBP15.56■□□□□ 0.08
COL17A1-201ENST00000353479 RGPD8O14715 1765 aaPredicted RBP15.56■□□□□ 0.08
COL17A1-201ENST00000353479 MBL2P11226 248 aaPredicted RBP15.56■□□□□ 0.08
COL17A1-201ENST00000353479 CLNS1AP54105 237 aaKnown RBP15.56■□□□□ 0.08
COL17A1-201ENST00000353479 SP3Q02447 781 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 C1orf186Q6ZWK4 172 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 MAP4K3Q8IVH8 894 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 TRIM54Q9BYV2 358 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 DRC3Q9H069 523 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 KIF13AQ9H1H9 1805 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 PORCNQ9H237 461 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 GPATCH2LQ9NWQ4 482 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 A0A1B0GUA9 196 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 PSTPIP1O43586 416 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 NT5DC1Q5TFE4 455 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 ARHGEF19Q8IW93 802 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 KRT35Q92764 455 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 TGS1Q96RS0 853 aaKnown RBP15.56■□□□□ 0.08
COL17A1-201ENST00000353479 CYP3A7-CYP3A51PA0A087WV96 503 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 CYP3A7P24462 503 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 MAP2K5Q13163 448 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 DNAAF5Q86Y56 855 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 SLC13A5Q86YT5 568 aaPredicted RBP15.56■□□□□ 0.08
COL17A1-201ENST00000353479 SNX19Q92543 992 aa15.56■□□□□ 0.08
COL17A1-201ENST00000353479 DUSP9Q99956 384 aaKnown RBP15.56■□□□□ 0.08
COL17A1-201ENST00000353479 NDST1P52848 882 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms