RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MAGEA10P43363 369 aaPredicted RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 MFAP3P55082 362 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 KCNQ4P56696 695 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 PDE1BQ01064 536 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 MTM1Q13496 603 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 MTMR2Q13614 643 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 MYBPC2Q14324 1141 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 MORF4L2Q15014 288 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 R3HDM1Q15032 1099 aaKnown RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS39-202ENST00000348544 FNBP1LQ5T0N5 605 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 C1QTNF12Q5T7M4 302 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 ACBD5Q5T8D3 534 aaPredicted RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 C1orf146Q5VVC0 180 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 ANKRD22Q5VYY1 191 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 FBXL19Q6PCT2 694 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 DHDDSQ86SQ9 333 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 RASSF3Q86WH2 238 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 KATNAL2Q8IYT4 538 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 GSTCDQ8NEC7 633 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 PYDC1Q8WXC3 89 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 TTC17Q96AE7 1141 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 MTBPQ96DY7 904 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 SERAC1Q96JX3 654 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 EPB41L1Q9H4G0 881 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 TUFT1Q9NNX1 390 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 AVENQ9NQS1 362 aaPredicted RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 TOPORSQ9NS56 1045 aaPredicted RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 HSPBP1Q9NZL4 362 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 ADAMTS6Q9UKP5 1117 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 CHMP2BQ9UQN3 213 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 STK24Q9Y6E0 443 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 GREB1LQ9C091 1923 aaPredicted RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 GAKO14976 1311 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 MYPNQ86TC9 1320 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 A0A088AWK7 358 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 SMIM31A0A1B0GVY4 71 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 GOLGA8IPA6NC78 632 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 GOLGA8JA6NMD2 632 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 MEI4A8MW99 385 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 K7ENM7 598 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 PSTPIP1O43586 416 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 RAD21O60216 631 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 PSMD10O75832 226 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 CIB2O75838 187 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 TMCC1O94876 653 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 UQCRBP14927 111 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 PEX2P28328 305 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 TBL3Q12788 808 aaKnown RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 USH1GQ495M9 461 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 KAZNQ674X7 775 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 OLFML2BQ68BL8 750 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 DUS1LQ6P1R4 473 aaKnown RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 UGT2A3Q6UWM9 527 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 SH2D5Q6ZV89 423 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 STXBP4Q6ZWJ1 553 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 CENPUQ71F23 418 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 ADGRG6Q86SQ4 1221 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 RHOT1Q8IXI2 618 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 RPGRQ92834 1020 aaKnown RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 FAM84AQ96KN4 292 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 ACSS3Q9H6R3 686 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 ZNF395Q9H8N7 513 aaPredicted RBP7.13□□□□□ -1.27
VPS39-202ENST00000348544 PPCSQ9HAB8 311 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 USP29Q9HBJ7 922 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 S100A14Q9HCY8 104 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 PICK1Q9NRD5 415 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 STRIP2Q9ULQ0 834 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 ZNF148Q9UQR1 794 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 LPXNO60711 386 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 STK10O94804 968 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 SORBS2O94875 1100 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 IL1BP01584 269 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 CFHP08603 1231 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 VCLP18206 1134 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 STIP1P31948 543 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 CPOXP36551 454 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 NFX1Q12986 1120 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 MED21Q13503 144 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 NCOA4Q13772 614 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 MAP7Q14244 749 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 EAPPQ56P03 285 aaPredicted RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 CBWD2Q8IUF1 395 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 EXD1Q8NHP7 514 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 TAS1R2Q8TE23 839 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 HAUS1Q96CS2 278 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 PRICKLE1Q96MT3 831 aaPredicted RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 PTTG2Q9NZH5 202 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 PPARGC1AQ9UBK2 798 aaKnown RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 FETUBQ9UGM5 382 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 TAGLN3Q9UI15 199 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 POLIQ9UNA4 740 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 SHOC2Q9UQ13 582 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 USTQ9Y2C2 406 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 DAGLAQ9Y4D2 1042 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 FARP1Q9Y4F1 1045 aaPredicted RBP7.12□□□□□ -1.27
VPS39-202ENST00000348544 PRR5-ARHGAP8B1AHC4 643 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 PMM2O15305 246 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 PFDN1O60925 122 aa7.12□□□□□ -1.27
VPS39-202ENST00000348544 CCDC166P0CW27 439 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms