RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 MAGEA4P43358 317 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 SLC26A2P50443 739 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 ARSEP51690 589 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 ACTN3Q08043 901 aaPredicted RBP16.29■□□□□ 0.2
UPF3B-202ENST00000345865 FASTKD3Q14CZ7 662 aaKnown RBP16.29■□□□□ 0.2
UPF3B-202ENST00000345865 EAPPQ56P03 285 aaPredicted RBP16.29■□□□□ 0.2
UPF3B-202ENST00000345865 JADE1Q6IE81 842 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 EMC1Q8N766 993 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 SLC4A11Q8NBS3 891 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 BBOF1Q8ND07 529 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 TMEM121Q9BTD3 319 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 LHX5Q9H2C1 402 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 C10orf88Q9H8K7 445 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 MLXIPLQ9NP71 852 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 EURLQ9NYK6 297 aa16.29■□□□□ 0.2
UPF3B-202ENST00000345865 A0A087WZ62 844 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 SIGLEC16A6NMB1 481 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 ITGB3P05106 788 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 STAG3L1P0CL83 205 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 KRT3P12035 628 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 PTPN7P35236 360 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 CETN2P41208 172 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 TAP1Q03518 808 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 ARHGAP1Q07960 439 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 PPIL2Q13356 520 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 TTLL12Q14166 644 aaPredicted RBP16.28■□□□□ 0.2
UPF3B-202ENST00000345865 ZNF667Q5HYK9 610 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 HP1BP3Q5SSJ5 553 aaPredicted RBP16.28■□□□□ 0.2
UPF3B-202ENST00000345865 CYP4F22Q6NT55 531 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 CCDC121Q6ZUS5 278 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 CCDC125Q86Z20 511 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 CCDC13Q8IYE1 715 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 CPB2Q96IY4 423 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 FDXACB1Q9BRP7 624 aaPredicted RBP16.28■□□□□ 0.2
UPF3B-202ENST00000345865 ELOVL4Q9GZR5 314 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 ZWILCHQ9H900 591 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 NAALADL1Q9UQQ1 740 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 CEP83Q9Y592 693 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 GH1P01241 217 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 ERBB2P04626 1255 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 PECAM1P16284 738 aaPredicted RBP16.28■□□□□ 0.2
UPF3B-202ENST00000345865 PSMA2P25787 234 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 GJA5P36382 358 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 VCPP55072 806 aaKnown RBP16.28■□□□□ 0.2
UPF3B-202ENST00000345865 COPS2P61201 443 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 YWHAEP62258 255 aaKnown RBP16.28■□□□□ 0.2
UPF3B-202ENST00000345865 LMNB2Q03252 620 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 GPS1Q13098 491 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 XYLT1Q86Y38 959 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 CCT6BQ92526 530 aa16.28■□□□□ 0.2
UPF3B-202ENST00000345865 DRG1Q9Y295 367 aaKnown RBP16.28■□□□□ 0.2
UPF3B-202ENST00000345865 ASAP2O43150 1006 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 CD48P09326 243 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 CYP2C8P10632 490 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 GCAP28676 217 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 PSMC1P62191 440 aaKnown RBP16.27■□□□□ 0.2
UPF3B-202ENST00000345865 TTLL4Q14679 1199 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 CCDC142Q17RM4 750 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 ANKRD20A8PQ5CZ79 823 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 MAMDC4Q6UXC1 1216 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 NFKBIZQ9BYH8 718 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 SAYSD1Q9NPB0 183 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 ERAP1Q9NZ08 941 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 LGALS13Q9UHV8 139 aa16.27■□□□□ 0.2
UPF3B-202ENST00000345865 IL18RAPO95256 599 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 VTNP04004 478 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 LGALS2P05162 132 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 VIMP08670 466 aaKnown RBP16.27■□□□□ 0.19
UPF3B-202ENST00000345865 DYNLT1P63172 113 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 PDE4CQ08493 712 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 ADCY1Q08828 1119 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 TAF5Q15542 800 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 SLC10A6Q3KNW5 377 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 ARMCX2Q7L311 632 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 CNPY4Q8N129 248 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 LINC01465Q8N7H1 131 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 SLC35B2Q8TB61 432 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 NKD2Q969F2 451 aaPredicted RBP16.27■□□□□ 0.19
UPF3B-202ENST00000345865 ELAC2Q9BQ52 826 aaKnown RBP16.27■□□□□ 0.19
UPF3B-202ENST00000345865 PDZD7Q9H5P4 517 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 DDX56Q9NY93 547 aaKnown RBP16.27■□□□□ 0.19
UPF3B-202ENST00000345865 RNF181Q9P0P0 153 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 STRIP2Q9ULQ0 834 aa16.27■□□□□ 0.19
UPF3B-202ENST00000345865 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.27■□□□□ 0.19
UPF3B-202ENST00000345865 BRAFP15056 766 aa16.26■□□□□ 0.19
UPF3B-202ENST00000345865 GDF10P55107 478 aa16.26■□□□□ 0.19
UPF3B-202ENST00000345865 TAPT1Q6NXT6 567 aa16.26■□□□□ 0.19
UPF3B-202ENST00000345865 POLNQ7Z5Q5 900 aa16.26■□□□□ 0.19
UPF3B-202ENST00000345865 ANKRD42Q8N9B4 389 aa16.26■□□□□ 0.19
UPF3B-202ENST00000345865 CCDC197Q8NCU1 140 aa16.26■□□□□ 0.19
UPF3B-202ENST00000345865 MROH8Q9H579 483 aa16.26■□□□□ 0.19
UPF3B-202ENST00000345865 KCNK9Q9NPC2 374 aa16.26■□□□□ 0.19
UPF3B-202ENST00000345865 METTL5Q9NRN9 209 aaKnown RBP16.26■□□□□ 0.19
UPF3B-202ENST00000345865 PRMT7Q9NVM4 692 aaPredicted RBP16.26■□□□□ 0.19
UPF3B-202ENST00000345865 TPX2Q9ULW0 747 aaKnown RBP16.26■□□□□ 0.19
UPF3B-202ENST00000345865 GOLGA6L7A0A1B0GV03 622 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 CILPO75339 1184 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 ITGAVP06756 1048 aa16.25■□□□□ 0.19
UPF3B-202ENST00000345865 ARF4P18085 180 aaPredicted RBP16.25■□□□□ 0.19
UPF3B-202ENST00000345865 GAD2Q05329 585 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms